RNA id: TCONS_00011828


Basic Information

Item Value
RNA id TCONS_00011828
length 2253
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_005989
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25199849 ~ 25209083 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACAGAGTGTCATAGCTGTCCCTGTGTTTTGCCAGAACAGAGAAATACATTCCTGTTATAAATTAAGCGTAGATTTGGACGCATCGACTGGGAAGGAGGAGTGACACATCTGCCACATTTGCAAGAGGGGGATATCGCATGAAAACATTGATCAAGACAGCTGTCTGCAGCGCTCATCATGATTCACAGCCTGTTCTTGATAAACAATGTTGGTGATTTATTCCTGGAGAAACACTGGAAGAGTGTCATAAGCCGCTCCGTCTGCGATTATTTCTTCGAAGCACGAGAGAAGGCAGGGGAACCGGACAATGTGCCTCCTGTCATCCGCACCCCTCATCACTATCTCATAAATATATACCGTGACAAGATCTTCTTCGTCTCCGTCATCCAAACGGAAGTGCCTCCGCTGTTTGTAATAGAATTTCTCCATCGGGTTGCAGAGACTTTTCAGgaTTATTTTGGAGAATGTTCTGAGACGACTATAAAAGAAAATATGGTAATAGTCTATGAGCTCCTAGAGGAAATGCTGGATAACGGTTTCCCCCTTGCCACAGAATCTAACATCTTAAAAGAGCTCATCAGACCTCCTAATATCCTGCGCACAATGGTCAACACTATCACGGGTAGCAGTAATGTTGGCGAAACCCTTCCTACTGGCCAGCTTTCCACAATCCCGTGGAGAAGAGCCGGAGTGAAATATACCAATAACGAAGCTTACTTTGATGTGGTGGAGGAAATCGATGCCATCCTGGATAAGTCTGGAACTACGGTTTTCGCAGAAATCCAGGGAGTTATTGATGCTTGTGTGAAGCTCTCTGGAATGCCAGACCTTACTCTTTCATTTATGAACCCAAGACTCCTGGACGATGTGAGCTTCCATCCGTGTGTTCGTTATAAGAGATGGGAAAGTGAGAGAGTCATTTCCTTCATTCCGCCTGATGGAAACTTCCAGCTCATGTCGTATCACATCAGTGCACAAAATCTTGTAGCGATCCCAGTTTATGTGAAGCAAAACATCAGTTTCTTTGAGAGCGGGTCTTCAGGAAGACTGGACATCACTGTGAGCCCCAAGCAGACCATGGGGAAAGTTGTGGAGTGTGTGGTGGTGACTATACACATGCCTAAAGTGGTTCTCAGTGCCAGCCTCAATGCCACTCAGGGAACCTACAAATACGACCCGCTTACCAAGATTTTGGTGTGGGATATAGGTAAGCTTAATCCTCAGAATACCCAAAAGCAACCCAATCTGAAAGGAAGTCTAAGTCTGCAGTCTGGAGCTCCTAAACCGGAAGAGAACCCAAGTCTGAACATTGACCTGAAAATCCAGCAGTTAGCCATCTCAGGACTAAAGGTGAATCGTCTAGACATGTACGGAGAGAAATATAAACCGTTCAAAGGTGTGAAATATGTCACCAAAGCTGGGAAGTTTCAGGTCAGGACATGAGGACCCGGCTGCAGATCATCACAATCATATGCCAAAAGTTGATCAGAGGTGCCATTTCTCTAAATGACAAATCATGCAAGATTGCAACCGAGTACAATCTCCCTTATTTTTTACAGCATCGAAGTTACATTTGTTATCGTAATATTTATCGTTCTATATTTTATGGGAAGTAACTGGCAAGAAGTGAAAATCTCCACTGGAGAAAATTGGTAGAGTATTTTCTTTGGGAATCTTTATCTTCATATCAATAACATTCCATTAGTGTATCTGCTTAATGTCAGATAATCTACATCTCTGCCAGGAATGTTACAATTTACCATCTCAAAACCAAAATCtagaatatataatatacacaagCCTTCTTTTAtactttagttgttttttttgcatttcatttgGTTTAGCGGCCTTTGAATGGATAAAATACTTTAGGCCTCAAACAAAAAAATGGCCTTTCCTTAAAAGCACATGGCCATGTTTATACGCAATCTATTTCTTTACTACACAAGCACATTGCTGCTCAGAGGTCAGTGTTGCAGAAAATGTCCAAGTAAATGTACTTTAATGCTTAAAGTAGTTTCAGTTGTGAGCACAAGTGAAGAAATCACTGTCACACTGTCCTGCGGTCACACGGTAGATACTACATGTAGGTGTGAAGCTTTGAGGATGTGCACAGAAACACAACggcattattttttataaaatgtcaaGGGAATtgcttaaatgcattttaaaatatgtatttcaaCCAAAAGCCTTCAGATTTATAAAGTttgcaaataaaactttttttgtgtgtctttCACT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-021015-2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; polster; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human AP3M1 (adaptor related protein complex 3 subunit mu 1).

Ensembl:

ensembl_id ENSDART00000130876

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011814 lncRNA upstream 522829 24675824 ~ 24677020 (+) True XLOC_005980
TCONS_00011811 lncRNA upstream 549910 24597665 ~ 24649939 (+) False XLOC_005978
TCONS_00013397 lncRNA upstream 549910 24597711 ~ 24649939 (+) True XLOC_005978
TCONS_00013600 lncRNA upstream 601604 24597665 ~ 24598245 (+) False XLOC_005978
TCONS_00013599 lncRNA upstream 626921 24570620 ~ 24572928 (+) True XLOC_005975
TCONS_00011848 lncRNA downstream 224765 25433845 ~ 25435876 (+) False XLOC_005996
TCONS_00011860 lncRNA downstream 552199 25761279 ~ 25762391 (+) True XLOC_006004
TCONS_00013601 lncRNA downstream 560919 25769999 ~ 25782811 (+) True XLOC_006005
TCONS_00013602 lncRNA downstream 735199 25944279 ~ 25952841 (+) False XLOC_006007
TCONS_00013603 lncRNA downstream 735199 25944279 ~ 25961369 (+) False XLOC_006007
TCONS_00011825 mRNA upstream 345187 24851102 ~ 24854662 (+) False XLOC_005988
TCONS_00011826 mRNA upstream 345676 24853578 ~ 24854173 (+) True XLOC_005988
TCONS_00011824 mRNA upstream 349037 24842857 ~ 24850812 (+) True XLOC_005987
TCONS_00011823 mRNA upstream 361872 24834199 ~ 24837977 (+) True XLOC_005986
TCONS_00011822 mRNA upstream 369132 24829996 ~ 24830717 (+) True XLOC_005985
TCONS_00011830 mRNA downstream 77458 25286538 ~ 25379820 (+) False XLOC_005990
TCONS_00011831 mRNA downstream 155244 25364324 ~ 25379820 (+) False XLOC_005990
TCONS_00011832 mRNA downstream 155673 25364753 ~ 25379640 (+) True XLOC_005990
TCONS_00011833 mRNA downstream 171352 25380432 ~ 25389051 (+) True XLOC_005991
TCONS_00011834 mRNA downstream 187816 25396896 ~ 25402772 (+) False XLOC_005992
TCONS_00011821 other upstream 370980 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011801 other upstream 909611 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011791 other upstream 1378549 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011768 other upstream 2327432 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011749 other upstream 2617369 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011850 other downstream 234904 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011851 other downstream 235204 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011863 other downstream 1494817 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011865 other downstream 1495193 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011871 other downstream 2023717 27232797 ~ 27237577 (+) False XLOC_006015

Expression Profile

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