RNA id: TCONS_00011833


Basic Information

Item Value
RNA id TCONS_00011833
length 1486
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_005991
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25380432 ~ 25389051 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGATCATAAGACATGCCCTCTATGGCTATAAATCACCAATAAATACACCAACTTCCCTTTCATCTTCGAAATTTGTGGCACAGTCATTGATTTAGACAGTTCTTTTGGTTTCTCTGAATAAAATAATGGCTGCATCTCAGAAATGTCTTGGGAAAGGAAGTCCTGCTCCTGGTCCAGTGCCAAAGGACCATATTCGGCTCTACAGCATGAGATTCTGCCCGTTTGCCCAAAGAACCAGATTGGTGCTCAATGCCAAGGGAATAAAATACGACACCATCAACATCAATTTGAAGAACAAACCTGACTGGTTTCTGGAGAAGAATCCCCTTGGTTTAGTGCCAGTGCTGGAGACTCAGAGTGGTCAGGTGATCTACGAATCTCCAATCACCTGTGAGTACCTGGACGAGGTCTATCCTGAGAAGAAGCTGCTCCCGTTTGACCCGTTTGAGAGGGCGCAACAGAGAATGCTGCTGGAGCTTTTCTCAAAGGTGACTCCCTACTTCTATAAGATCCCCGTGAATAGGACGAAAGGAGAGGATGTGTCTGCACTTGAAACAGAACTTAAAGACAAACTCTCTCAGTTCAATGAGATCCTCCTCAAGAAGAAGAGCAAGTTTTTTGGAGGGGATTCAATAACAATGATTGACTACATGATGTGGCCATGGTTTGAGAGGCTGGAGACGATGAATCTGAAGCACTGCTTGGACGGCACACCTGAGCTGAAGAAGTGGACCGAGCGCATGATGGAGGATCCCACTGTTAAAGCTACGATGTTTAGCACAGAAACCTACATGGTCTTCTACAAGTCCTACATGGAGGGAAGCCCAAATTATGATTAcggtttataaataaataaatcttgtcTGGTAAATGATGCCTTTATTGTCTGTTAAGCTGTTTAAACAGATGTTTGCCATGAAATACATTCTTTTATAATCTGATCACAATTAATCTGAAAAGAGAATTTCTTAACTGTTTATTCATCCTTCATGTGACAGGTTTTTGGTGGTGTGTAAATCTACACTTTATTCTTAAAAAGCAGATGTGAATCTAGTAAGTTCAGTTCAAAATCTGAACTGaactttattctttaaataacaTTGATTCACCTATGTCTATTACACTTTGACATGATTAAAGAGTGGACAGCATTCAGATTCAGCTTTTGACACAGACAGAGCAGTTGTTGTGTTGATCTTTATTTCTGTGGTACTAAAGGTTTATGGGTTTACATATCTATGGTTGTGTTCCTAacagtaaatctttttttttatgttacttgaAATAAAGATTGTATTGTTTACGACGTTTTGGCAATTGCTCACAACGTGTGATTGAACTGTATTTGTCTTTGAAtcattcagatgtttttgttaaacacctttatttttctatttctaggAATAAAGCAAATGAAGTCTGTATGAGTGAATCATTTAACAATTTATTCAAGATGATCATTAAAAAAAGCACTCATTCATCAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0045174 glutathione dehydrogenase (ascorbate) activity molecular_function
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-365 Predicted to enable glutathione dehydrogenase (ascorbate) activity. Predicted to act upstream of or within glutathione metabolic process. Predicted to be located in cytoplasm. Is expressed in brain; gill; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease and Parkinson's disease. Orthologous to human GSTO1 (glutathione S-transferase omega 1).

Ensembl:

ensembl_id ENSDART00000038524

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011814 lncRNA upstream 703412 24675824 ~ 24677020 (+) True XLOC_005980
TCONS_00011811 lncRNA upstream 730493 24597665 ~ 24649939 (+) False XLOC_005978
TCONS_00013397 lncRNA upstream 730493 24597711 ~ 24649939 (+) True XLOC_005978
TCONS_00013600 lncRNA upstream 782187 24597665 ~ 24598245 (+) False XLOC_005978
TCONS_00013599 lncRNA upstream 807504 24570620 ~ 24572928 (+) True XLOC_005975
TCONS_00011848 lncRNA downstream 44794 25433845 ~ 25435876 (+) False XLOC_005996
TCONS_00011860 lncRNA downstream 372228 25761279 ~ 25762391 (+) True XLOC_006004
TCONS_00013601 lncRNA downstream 380948 25769999 ~ 25782811 (+) True XLOC_006005
TCONS_00013602 lncRNA downstream 555228 25944279 ~ 25952841 (+) False XLOC_006007
TCONS_00013603 lncRNA downstream 555228 25944279 ~ 25961369 (+) False XLOC_006007
TCONS_00011830 mRNA upstream 612 25286538 ~ 25379820 (+) False XLOC_005990
TCONS_00011831 mRNA upstream 612 25364324 ~ 25379820 (+) False XLOC_005990
TCONS_00011832 mRNA upstream 792 25364753 ~ 25379640 (+) True XLOC_005990
TCONS_00011829 mRNA upstream 171349 25200105 ~ 25209083 (+) True XLOC_005989
TCONS_00011828 mRNA upstream 171352 25199849 ~ 25209080 (+) False XLOC_005989
TCONS_00011834 mRNA downstream 7845 25396896 ~ 25402772 (+) False XLOC_005992
TCONS_00011835 mRNA downstream 8047 25397098 ~ 25402772 (+) True XLOC_005992
TCONS_00011836 mRNA downstream 21543 25410594 ~ 25411902 (+) True XLOC_005993
TCONS_00011837 mRNA downstream 23256 25412307 ~ 25417915 (+) False XLOC_005994
TCONS_00011838 mRNA downstream 23623 25412674 ~ 25415925 (+) True XLOC_005994
TCONS_00011821 other upstream 551563 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011801 other upstream 1090194 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011791 other upstream 1559132 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011768 other upstream 2508015 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011749 other upstream 2797952 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011850 other downstream 54933 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011851 other downstream 55233 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011863 other downstream 1314846 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011865 other downstream 1315222 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011871 other downstream 1843746 27232797 ~ 27237577 (+) False XLOC_006015

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12138610_12140673.mRNA True 1221 mRNA 0.40 6 CI01000012 12138604 ~ 12141165 (-)