Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00011848 |
| length | 807 |
| lncRNA type | retained_intron |
| GC content | 0.36 |
| exon number | 3 |
| gene id | XLOC_005996 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 25428677 ~ 25438298 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0012505 | endomembrane system | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-560 | Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. |
| ensembl_id | ENSDART00000136043 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00011814 | lncRNA | upstream | 756825 | 24675824 ~ 24677020 (+) | True | XLOC_005980 |
| TCONS_00011811 | lncRNA | upstream | 783906 | 24597665 ~ 24649939 (+) | False | XLOC_005978 |
| TCONS_00013397 | lncRNA | upstream | 783906 | 24597711 ~ 24649939 (+) | True | XLOC_005978 |
| TCONS_00013600 | lncRNA | upstream | 835600 | 24597665 ~ 24598245 (+) | False | XLOC_005978 |
| TCONS_00013599 | lncRNA | upstream | 860917 | 24570620 ~ 24572928 (+) | True | XLOC_005975 |
| TCONS_00011860 | lncRNA | downstream | 325403 | 25761279 ~ 25762391 (+) | True | XLOC_006004 |
| TCONS_00013601 | lncRNA | downstream | 334123 | 25769999 ~ 25782811 (+) | True | XLOC_006005 |
| TCONS_00013602 | lncRNA | downstream | 508403 | 25944279 ~ 25952841 (+) | False | XLOC_006007 |
| TCONS_00013603 | lncRNA | downstream | 508403 | 25944279 ~ 25961369 (+) | False | XLOC_006007 |
| TCONS_00013398 | lncRNA | downstream | 508499 | 25944375 ~ 25949680 (+) | False | XLOC_006007 |
| TCONS_00011844 | mRNA | upstream | 6890 | 25421531 ~ 25426955 (+) | False | XLOC_005995 |
| TCONS_00011845 | mRNA | upstream | 9559 | 25422009 ~ 25424286 (+) | True | XLOC_005995 |
| TCONS_00011843 | mRNA | upstream | 9576 | 25418561 ~ 25424269 (+) | False | XLOC_005995 |
| TCONS_00011842 | mRNA | upstream | 9701 | 25418561 ~ 25424144 (+) | False | XLOC_005995 |
| TCONS_00011841 | mRNA | upstream | 11963 | 25418561 ~ 25421882 (+) | False | XLOC_005995 |
| TCONS_00011852 | mRNA | downstream | 13805 | 25449681 ~ 25450725 (+) | True | XLOC_005998 |
| TCONS_00011853 | mRNA | downstream | 19443 | 25455319 ~ 25471376 (+) | True | XLOC_005999 |
| TCONS_00011854 | mRNA | downstream | 50732 | 25486608 ~ 25498661 (+) | True | XLOC_006000 |
| TCONS_00011855 | mRNA | downstream | 69704 | 25505580 ~ 25532487 (+) | True | XLOC_006001 |
| TCONS_00011856 | mRNA | downstream | 113549 | 25549425 ~ 25566308 (+) | False | XLOC_006002 |
| TCONS_00011821 | other | upstream | 604976 | 24828753 ~ 24828869 (+) | True | XLOC_005984 |
| TCONS_00011801 | other | upstream | 1143607 | 24287723 ~ 24290238 (+) | True | XLOC_005969 |
| TCONS_00011791 | other | upstream | 1612545 | 23821186 ~ 23821300 (+) | True | XLOC_005962 |
| TCONS_00011768 | other | upstream | 2561428 | 22863545 ~ 22872417 (+) | False | XLOC_005952 |
| TCONS_00011748 | other | upstream | 2831279 | 22555938 ~ 22602566 (+) | False | XLOC_005943 |
| TCONS_00011850 | other | downstream | 8108 | 25443984 ~ 25444370 (+) | False | XLOC_005997 |
| TCONS_00011851 | other | downstream | 8408 | 25444284 ~ 25444523 (+) | True | XLOC_005997 |
| TCONS_00011863 | other | downstream | 1268021 | 26703897 ~ 26709399 (+) | False | XLOC_006010 |
| TCONS_00011865 | other | downstream | 1268397 | 26704273 ~ 26772366 (+) | True | XLOC_006010 |
| TCONS_00011871 | other | downstream | 1796921 | 27232797 ~ 27237577 (+) | False | XLOC_006015 |
