RNA id: TCONS_00013398


Basic Information

Item Value
RNA id TCONS_00013398
length 498
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_006007
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25944279 ~ 25961369 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCTTTAACGGCAGGCTGTCAGGCTTCTGGAGTCATTAGAAACGGACACCTGCTTGCTGAATGGGGGTCGAGCAATGCCACAAGAACTTGTGCGACGACTCCAATCTCATTAAAGGATCGGAGTGCTTGCCTGTGATGACGGTCTCTCACAGCCACATGTACAACAGCCTTGGACTCTCTTCTCCTCTCCTCGGGGCATCTGGTGTGGACCTTAATCCCAGCGTAGCCTGATGGTTGAGTGTGCCCAGGCAGACTGGAGCTAATctgctggagagagagagaaaaaaagagcctGTCCGTGCTTGCTGTTAACACGTCTCGTTCCTGCTCAACTCTGGGAGCTGTGCAGGGTGACCTGGGTTAATTGCAGCTGCAGAGATGAACAGCCTGGGTCACCTTCGCTACGGAAGAGACGGGGGAAAAATGAGGTAATCATAGAGGACGGCTGAAGTTGAACCACAGAGATTTTTTCAGGACAGTTCCTAATAGCTGGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013601 lncRNA upstream 161564 25769999 ~ 25782811 (+) True XLOC_006005
TCONS_00011860 lncRNA upstream 181984 25761279 ~ 25762391 (+) True XLOC_006004
TCONS_00011848 lncRNA upstream 508499 25433845 ~ 25435876 (+) False XLOC_005996
TCONS_00011814 lncRNA upstream 1267355 24675824 ~ 24677020 (+) True XLOC_005980
TCONS_00013397 lncRNA upstream 1294436 24597711 ~ 24649939 (+) True XLOC_005978
TCONS_00013399 lncRNA downstream 16047 25965727 ~ 25966342 (+) False XLOC_006008
TCONS_00013605 lncRNA downstream 16092 25965772 ~ 25983365 (+) True XLOC_006008
TCONS_00013606 lncRNA downstream 106777 26056457 ~ 26059512 (+) False XLOC_006009
TCONS_00013608 lncRNA downstream 106781 26056461 ~ 26065264 (+) False XLOC_006009
TCONS_00013607 lncRNA downstream 106781 26056461 ~ 26065264 (+) True XLOC_006009
TCONS_00011861 mRNA upstream 19151 25846528 ~ 25925224 (+) False XLOC_006006
TCONS_00011862 mRNA upstream 87447 25853757 ~ 25856928 (+) True XLOC_006006
TCONS_00011859 mRNA upstream 182251 25761279 ~ 25762124 (+) False XLOC_006004
TCONS_00011858 mRNA upstream 217841 25720969 ~ 25726534 (+) True XLOC_006003
TCONS_00011856 mRNA upstream 378067 25549425 ~ 25566308 (+) False XLOC_006002
TCONS_00011864 mRNA downstream 754242 26703922 ~ 26780797 (+) False XLOC_006010
TCONS_00011866 mRNA downstream 1091207 27040887 ~ 27043334 (+) True XLOC_006012
TCONS_00011867 mRNA downstream 1124221 27073901 ~ 27210001 (+) True XLOC_006013
TCONS_00011870 mRNA downstream 1283014 27232694 ~ 27293794 (+) False XLOC_006015
TCONS_00011872 mRNA downstream 1283168 27232848 ~ 27296949 (+) False XLOC_006015
TCONS_00011851 other upstream 499852 25444284 ~ 25444523 (+) True XLOC_005997
TCONS_00011850 other upstream 500005 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011821 other upstream 1115506 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011801 other upstream 1654137 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011791 other upstream 2123075 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011863 other downstream 754217 26703897 ~ 26709399 (+) False XLOC_006010
TCONS_00011865 other downstream 754593 26704273 ~ 26772366 (+) True XLOC_006010
TCONS_00011871 other downstream 1283117 27232797 ~ 27237577 (+) False XLOC_006015
TCONS_00011873 other downstream 1326890 27276570 ~ 27277227 (+) True XLOC_006015
TCONS_00011887 other downstream 1845450 27795130 ~ 27795209 (+) True XLOC_006022

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU86879 True 300 lncRNA 0.51 1 CI01000012 11791343 ~ 11791642 (+)
eurasian perch (Perca fluviatilis) TU86879 True 1011 lncRNA 0.39 2 NC_053117.1 26572244 ~ 26580813 (+)
mexican tetra (Astyanax mexicanus) TU86879 True 428 lncRNA 0.35 2 NC_035903.1 16508936 ~ 16514868 (-)