AMCG00008587


Basic Information

Item Value
gene id AMCG00008587
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4824127 ~ 4835656 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008587
GTGATTCGTAGAGGCTGGCTCACCATCAATATAAGCATTATGAAAGGAGGCTCAAAGGAGTACTGGTTTGTGCTGACTGCGGAGTCCCTGTCCTGGTACAAGGATGAGGAGgagaaagagaagaaatatATGCTGCCTTTGGATAACCTGAAGCTCAGAGATGTGGAGAAAGGCTTCATGTCCACCAAGCATACCTTTGCCATCTTTAACACAGAGTCGAGgaaCGTGTATAAGGACCTGCGTCAGATCGAGCTGGCCTGTGACACTCAGGAGGACGTGGACAGCTGGAAGGCATCTTTCCTGAGAGCTGGAGTTTATCCCGAGAAAGACCAAGTGGAGAATGAAGAGGCCGGGCCTGCGGACACCTTCTCAATGGACCCCCAGCTGGAGAGGCAAGTGGAGACTATTCGTAACCTGGTGGACTCCTACATCGGTATCGTCAACAAGTCCATCAGAGACCTCATGCCAAAGACCATCATGCACCTGATGATCAACAGTGCTAAGGACTTCATCCACTCGGAGCTGCTGGCCTACCTGTATTCCTCTGGGGACCAAAACAGTTTGATGGAGGAGTCGGCAGACCAGGCCCAGCGGCGAGACGAGATGCTGAGGATGTACCACGCCCTGAAAGAGGCCCTCCACATCATCGGGGACATCAGCACCACCACCATCTCTGTGCCCGTCCCCCCTCCAGTGGACGACGGCTGGATGCAGAAGGAGAccagcCCCACTCCCCAGCGGCGACCAGCCAGCGCGGCCCCCCCACCCAGCCGCCCCCCCGCAGTGAGGGGCCCAACACCGGGTCCCCCACTAAACCCCACCCCGGCCTTCGGAGCACCCCCAATTCCCTCTCGGCCTGGCCCCCCCCAGACCGCCTATGGGATGGGCAACCAAGACCCGTTCAGCGCCCCCCCACAGATCCCCTCCCGGCCCGCGAGAGTCCCTCCAGGCGTGCCCCCCGGTATCCCCAGGTAA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008587 True 975 mRNA 0.59 6 4824127 4835656

Neighbor

gene id symbol gene type direction distance location
AMCG00008588 NA coding upstream 11220 4800454 ~ 4812907 (+)
AMCG00008579 NA coding upstream 312067 4510990 ~ 4512060 (+)
AMCG00008569 NA coding upstream 725971 4097796 ~ 4098156 (+)
AMCG00008559 NA coding upstream 800634 4022525 ~ 4023493 (+)
AMCG00008560 NA coding upstream 813982 4009198 ~ 4010145 (+)
AMCG00008590 NA coding downstream 63789 4899445 ~ 4904073 (+)
AMCG00008593 LOC107093428 coding downstream 207098 5042754 ~ 5055756 (+)
AMCG00008594 NA coding downstream 258708 5094364 ~ 5108804 (+)
AMCG00008601 NA coding downstream 779263 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 909148 5744804 ~ 5757635 (+)
G50086 NA non-coding upstream 240922 4582902 ~ 4583205 (+)
G50066 NA non-coding upstream 296575 4515496 ~ 4527552 (+)
G50061 NA non-coding upstream 335889 4487999 ~ 4488238 (+)
G50055 NA non-coding upstream 355364 4462362 ~ 4468763 (+)
G50011 NA non-coding upstream 515291 4307826 ~ 4308836 (+)
G50142 NA non-coding downstream 81347 4917003 ~ 4917257 (+)
G50153 NA non-coding downstream 134353 4970009 ~ 4970248 (+)
G50180 NA non-coding downstream 313812 5149468 ~ 5149857 (+)
G50181 NA non-coding downstream 314239 5149895 ~ 5155484 (+)
G50185 NA non-coding downstream 587167 5422823 ~ 5423045 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 251253 4561991 ~ 4572874 (+)
G49982 NA other upstream 658644 4162058 ~ 4165483 (+)
G49980 NA other upstream 664065 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 938523 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 1935231 2886766 ~ 2888896 (+)
G50215 NA other downstream 760367 5596023 ~ 5596799 (+)
G50243 NA other downstream 902885 5738541 ~ 5742750 (+)
G50448 NA other downstream 2121955 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2461230 7296886 ~ 7315850 (+)
G50583 NA other downstream 3098173 7933829 ~ 7939771 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000174_00624749_00637683 DNM2B, DNM2 coding CI01000174 null 623853 ~ 637729 (+)