G50181


Basic Information

Item Value
gene id G50181
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5149895 ~ 5155484 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62770
ccctgcccagCAGAAACAGTGTACACCAGCGGCTTTCAAACTGGGGGGCTGGGAATCCCTTTGGGTGTCtgcagaaagaaataaagaaaaaaagtctggTTGACAACACGCCACCAGAGAAAAATAAGCGTCTCTAGAACATTCTCCATCCCTGCAACCATGGCAGCTAGTGTAAAAACTCCCTGAATAGGACCCTGGAGATTGAATGTACAGACAAGTGGGCCTACTCTTTGAGTTTGCTCCCATTTAACTGAAACGCCAGTGTTCCACTGTATGCACTGAAGGCATGGAACTGGTCGAACTGTATTAGTGTGTTGGATTGTTCTGTTTAGTGGTGGatctttgcctgttttttttttttttttttttttttataagggCACCTCCGCCAAAAACATTTGAGAACCGCTGGTTTAGACTGAAAGACAACtatgtacagacagacagacagcaataTCTGACACAGGGTCACTTCAACATTCCAGGCACAGCACCCATAgatatatctttatatttatatatgtatatagcaTTTTGACAAATAACCAGaagccaaaaaaaagaaaaagttatttCATTAGAAATCTATAGCAAGTCAATTGAAATGgaacttctttttttaaaaagaaacaaaaaacatccccAACCCAACCACCCACCCCCCAAATCCCTTATATGTCATTATTTGAATTCAGATTTTGTTCCTGTTCTGACAGAGCAGTTGCAGTTTGGTCATTGGCCCTTTGACAGAGAATGCTCATTCCAGATGTTGTCTCCAAATAAACACgttaataagtaaattaatacacaaacatacacagacTTAAATACACAAGTTTCCAGTCTCCCAAGTAAAATTCAAAGGATGAGCAGTGCCACcttgctgtattttgtttgtgtgttggtttgtaTGGCGTTTGAGGTTTGCCCTGCCTTCCTAACTAGCTGCTGGTTGAGCCGCGAGACAGGAACCTCGGAGAGGAAGGATAACAATACCGCACTCCAGCGATTTGGAGCCTAGAGGCCACACTGAAACTCTTCTCCAACTCGTCTCCCCGCTTTGATGagtattttctcatttgtttgctttcctttttccttGGTGGGTTCAAAAGGTATTAATAACGCAAGAGGACAGAGTAGCACATTAAACACAACATTCGGATATGTCACATTTTATCAACCGATATAGCAGGGTCATGGGGGTGACATAGATTACAtctttttaatggttttgtaaCAATTGAATTGGCCAGGGGGCTCTATCAGACTTGTCTCTATTGGTTTAACTTACAGACAATGCAGTTGCGGTCTTAATCTTTTTGGGTCCAATGAGGGCAAACTATAAAGTTAGTTATAGAATACAGAATatagaaaattaatattttttcagttctgtGGGTTAAAAACGAAAGGGAACACTTTTGTTActcttttttgtaattgttttttacttttcccCCTCTCACACATGGGGTCCTTATCGGCTTCTGTCTATCTAGCAAACTTCTTAAGTACCCGTAGCGGGAGGGACAAATGCACATCGCTTGAACATGCTTCAGACCCGTGTTTCTGGACTCTCCTGAGCGCTCCCCTGTGGAGTGGAAGTGAAGGGACTTACTGTTTTGTAAGATAATTACTTctctatgtttttttaatgatgacaacttttatttattgaattgctTGCAATCTGGTTCCCCCACTCCACTGCTTCTACCAGCTCCAGATTACGGGTTATTGAATGCCGTTGAAAGCaagcaccaccaccactaccactATAACAAAACTGTAACTGCAATGCTGGCTGCTGCTGTGTGGATCTCATGCAGAAGCACTCTGATTCTCCAGAGAGAGGCTGCCAATGACTGCTGCAAATCAGATactgggggggagggagagacagagagagagagagcgagagagagagaaataaatatggACTGCAGTCTGGGATGGGATGTGGGCTAGTGAAGTcttttagcagacaccttttACTGATGGCAAGGTAAGCaaagtttaattttcaaaagCTTCTCAACCCAGGATCAGGGCTGGTCTTTCCATCAGTCCCACAGGGGCATCAGGGCAGAGGTGGCttgtggtttgtgttccaaAGGAAGCTCCGAATTCCTAAATTACTTGACATATCTTCTCATTTTGGCTTATTTAGGATATTcctatacatatctatatacatatacacatatctatatatataactgtgtgtttgtgtgaaaaacaaacaagaagatTGCATAGCAGATGGAAAAGATAGACATCTGTGGATTGAGATGAGTGGAAGCCatttggggaggccttcatccagcagtggttCAGCAAATGCTGATGCTGATGatgtctatatatgtgtgtgtgtgtgttattattattattgttttattgtattaggTTTTACAGCTAATAGCTTAATATATGCTGTTTCCAGAGACTGCCTTTAACGATCAGTCACCTATCATTTTGCCTGCTCAGATAACTGGCTCAGTATTTCTGAATCTCTCTTTACCAAAGCACAAACATCTGGGAACACATTTGCCTCCACCCCATTAATTTTGAGCCAGTGAAGTCTATTTAAAGCTGATTCAGTACCGCGGTGCAGTGAGCAATAGCATCTAATGAACTGACCCAGAATCCGGGTCCCTTCAGCACTGCTTTAAACTTCAGTGCTgaggggatggggatggggatggggggggtcTATCCGAAGCAGCCTGGAAAGCAAGAAGTCAGGTAGGTATGGTGGGGTGATTAAAAGGAGAGTGGCAGGAAATTATGAAAGAGACGGGCCACTGTGGACAGCCTGATCAAGACTTGAATTACTTAAACATAGCATGGGGATCAAACAGACCGGAGCGCTCTTGGTACAGCCAAGCCCGCCAGTTAACAAGGACggatgttttaattaaaagtccCATTGCCTGCGAGAGCGATGGCAGTTCCAAAGCGCTGAGAGCCTGAACAGCTTGAATATGACACTCTGAGTTCCCTTAAGCTAAAATAAACCGCATTCTCGGGAGCAACGTTCTTTCAAGAGGCCTTAAACTTCAGTCGTACCGTTAGTCATTATTGAAAAGGACAAAGCATTGCACAGTAGATTGCAGTGggggggaaaatatattttcctgatGGAGATTATATTAGTTTTTCTGTAAAGCATTCTGTATTCACAACAGAAATGTGATAGTTACTGACTGAATAACTCAGGAGAGCTTGCTATTTAGGGATTTTCTTTCCCAGGGTGAGAGACTGTTTGCCAATTGCTGCTGAAGCCAGTGCATTGAAGTGGTTTGATTTAAGAACTTGACACAGAAGAGGGAAATTGTACTATAGTGATAATATAGTGCTAGTCAGTCTAACTGCAGCTAATTTAGAGAATGCTGAGAGTCTTTTCGGCAGGGCTTTAAAACGGTGCCACCCTGACGTGAGTCCTAAGTGCGCTCGAGAAATAAAGGCAGAACAGCCAGGATGGCGGTCCTTTTGCTTTTATAAGACCCTTCCCCCTGGCTGAGGGTGGAAACAACACTGATCCGAAGGTTTAATTAAAGGCAGAATCGCTTCAGTCAAGCGCCTCCTCTGATCCTTGCATTTGCTATCAGCACAGGAACAGCCGAGGGGGGAGAGGAAGTCCACAGTTAATACAACCCCATCCCCAAGTCAGTTCTATCCTCGCATCTCGTCAGCCGCACTGTGGGGTGGCGGACAAACGtctatataatatacacagaaACACTGCCCGACCTCCTTTATTGCACATACGCCCTGGCCAAGACCCACCTGAAAATCCCACCTCTTTCCTGTCACCATCAGGGTCAAAACAAACCTCACTTAAAAATGACAGCTGTTTAACGTGGCCAAGTCACAAGCTGAAGGGCCCACTTTCTATTTGAATCATCACCCGAATGTCGTCTGGAGAAAGGGTACTGGTcaaatagaagaagaagaatttagGAGGAATGCTGATCCTCTGTGTGACTATTGGTCCTGATGACCCTGTGTAGATTGGGCTAAAAACCCCTTCAGAGACAGACTTGGCATTTGTACCTTATAGAAGTGGTGTACACAGAcgtacacagacatacacacaataaatcaattaagatAAATAAAGCACTGCGTTATGGACTGAGGTGTGCATCCTTCATGAAGAGCAGAACCTCCCCAGCAATAATCGCCTCAGCCCTTTCTAATACCTGCCCCTGGATCAACAGCTGCAAAGCCGGACCCCGGTCAGACTCAGCCTCAGACCTGGTGAGGCGTGGATTAGCTATAGCGCCCCCTGGAGACTTTGAAGCCAACCAGCACCACAGCCCAGATTCGAACCTGCGAAGCTCTAGGCTGTAGGATTCGTAACACcagttttgtgattttatttgttgcCTGTGGCCGCTTTGACGGGACCACTTTGGCCCATACAGCGTTTCTGCCAGGGTCTTTCCTCAGAGAACCGACAATCAGCCTCACGAGAAATCCCCTCGTGTCAGCAAACATGGAACATGTTGAGAGAAATACATACAGTTCGAAAATGTATTGATAGCCGCTATCACAAGTAATTGAGGATAAGAGACTTTGTACGGACCCATAGAGAGCTTCCTTCATTTTGACCCTCCGTACAACTAggttaacaataaaataaacaaattaattaatgaattaaacacATAGACATACATAAAAGGCATTTCTCGGACCCCTACGTATCACGAGTTTTGGGAGAGCCCCCTGATCATCTCTGAACCTCCCTAGCACAGCCCAGTCCAGTCCGGTGCCTCCACACCAGAGTTGGCCAACCCTGGGCCCAGAGAGCCGCAGTGtcttgtgtgttattttgtgtgtttttttgcaaactGTAAACTACTTCATTGATTCAATTGTTGGGCTTAATGAGTCCAAATTACTTCAAGCGATTGATGATTTCCAGAGCCACGGCCACCTTTAACAGGAACGTGCTACGGCTCGGCCCTTTGGTAATTGACAGGAATATGGGTGATATCTTTTGTTGGCTCAACGTGCCTCTTTTTCCGTTTGTTAGGTTATCATCCTATAATTTCTCCAAACTCTGGCACAATGATTTCCCCTCTTCAAGACAGGGTTAGTGCGTGCACCTATGTTACAATGGGTGACAGCTTTTTGATAAGATTACCAGAATAGTTCCCTCTTATTAGGCAAATGACTTAAACGTAACAACTGCACTGTCACACAAGACTGATTCTGGTATAACAGGCAATCTGAGTGTGAGGGAGACAGGGTTAATGATCACAGGGAAAGCTGGCCGGGGTAAGGACCAGGTTCCTATGACTCCCCCAAAAGTGGAACGTAATTTGTAACTACGATTAAAATCGGTTGCGACTATAGTTATGGTTGGGCTGTTTCTCTGGGAAGAACACAGACTGGCACAGATCGTCTCCATTTTGGGATCTGTCTTTTTCATACTGGGAACAAAACCAGCCTGTCGCTCTGATATGGGTTTGAAAGTGGGCAGAGACCGAATACAAATGTTCAAGGACAAGAAGGGGCACTCCAGGTTtactccccacccccccaaacacCAACACCTAGACTaggcctcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62770 True 5590 lncRNA 0.44 1 5149895 5155484

Neighbor

gene id symbol gene type direction distance location
AMCG00008594 NA coding upstream 41091 5094364 ~ 5108804 (+)
AMCG00008593 LOC107093428 coding upstream 94139 5042754 ~ 5055756 (+)
AMCG00008590 NA coding upstream 245822 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 314239 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 336988 4800454 ~ 4812907 (+)
AMCG00008601 NA coding downstream 459435 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 589320 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 611280 5766764 ~ 5776682 (+)
AMCG00008607 NA coding downstream 688861 5844345 ~ 5847681 (+)
AMCG00008604 NA coding downstream 726509 5881993 ~ 5883048 (+)
G50180 NA non-coding upstream 38 5149468 ~ 5149857 (+)
G50153 NA non-coding upstream 179647 4970009 ~ 4970248 (+)
G50142 NA non-coding upstream 232638 4917003 ~ 4917257 (+)
G50086 NA non-coding upstream 566690 4582902 ~ 4583205 (+)
G50066 NA non-coding upstream 622343 4515496 ~ 4527552 (+)
G50185 NA non-coding downstream 267339 5422823 ~ 5423045 (+)
G50196 NA non-coding downstream 404537 5560021 ~ 5560609 (+)
G50206 NA non-coding downstream 423738 5579222 ~ 5580022 (+)
G50212 NA non-coding downstream 431316 5586800 ~ 5591201 (+)
G50213 NA non-coding downstream 436952 5592436 ~ 5592931 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 577021 4561991 ~ 4572874 (+)
G49982 NA other upstream 984412 4162058 ~ 4165483 (+)
G49980 NA other upstream 989833 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1264291 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2260999 2886766 ~ 2888896 (+)
G50215 NA other downstream 440539 5596023 ~ 5596799 (+)
G50243 NA other downstream 583057 5738541 ~ 5742750 (+)
G50448 NA other downstream 1802127 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2141402 7296886 ~ 7315850 (+)
G50583 NA other downstream 2778345 7933829 ~ 7939771 (+)

Expression


Co-expression Network