G50153


Basic Information

Item Value
gene id G50153
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4970009 ~ 4970248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62739
AAGATCATATATGATGAAGTGCTCCGTGCCAAAGAGATGAGCAGACACCGGCGTTTCGTTCAAAATAACCCAAACCAAACCAGAAAGACACAGATAAACCAGTGGACTTGGGTCGAAAATGCTCTAAATTATTCAAACGCTCTTGGTGTTAATATGtgcatcattaataataattaacaaaaaagttTATTAGAACTATGTATAGCATCATTGCGATAAGAAGGCACGTCGTAACAGGAA

Function

NR:

description
synapsin-2-like

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU62739 True 240 lncRNA 0.37 1 4970009 4970248

Neighbor

gene id symbol gene type direction distance location
AMCG00008590 NA coding upstream 65936 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 134353 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 157102 4800454 ~ 4812907 (+)
AMCG00008579 NA coding upstream 457949 4510990 ~ 4512060 (+)
AMCG00008569 NA coding upstream 871853 4097796 ~ 4098156 (+)
AMCG00008593 LOC107093428 coding downstream 72506 5042754 ~ 5055756 (+)
AMCG00008594 NA coding downstream 124116 5094364 ~ 5108804 (+)
AMCG00008601 NA coding downstream 644671 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 774556 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 796516 5766764 ~ 5776682 (+)
G50142 NA non-coding upstream 52752 4917003 ~ 4917257 (+)
G50086 NA non-coding upstream 386804 4582902 ~ 4583205 (+)
G50066 NA non-coding upstream 442457 4515496 ~ 4527552 (+)
G50061 NA non-coding upstream 481771 4487999 ~ 4488238 (+)
G50055 NA non-coding upstream 501246 4462362 ~ 4468763 (+)
G50180 NA non-coding downstream 179220 5149468 ~ 5149857 (+)
G50181 NA non-coding downstream 179647 5149895 ~ 5155484 (+)
G50185 NA non-coding downstream 452575 5422823 ~ 5423045 (+)
G50196 NA non-coding downstream 589773 5560021 ~ 5560609 (+)
G50206 NA non-coding downstream 608974 5579222 ~ 5580022 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 397135 4561991 ~ 4572874 (+)
G49982 NA other upstream 804526 4162058 ~ 4165483 (+)
G49980 NA other upstream 809947 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1084405 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2081113 2886766 ~ 2888896 (+)
G50215 NA other downstream 625775 5596023 ~ 5596799 (+)
G50243 NA other downstream 768293 5738541 ~ 5742750 (+)
G50448 NA other downstream 1987363 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2326638 7296886 ~ 7315850 (+)
G50583 NA other downstream 2963581 7933829 ~ 7939771 (+)

Expression


Co-expression Network