G50142


Basic Information

Item Value
gene id G50142
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4917003 ~ 4917257 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62727
TGGGCCccgggttcctcctggtgcaggacaatgtccggcctcatgtggccagagtgtgtagacagttcctggatgacgaaggcattgatgccattgactggccctcacgttccccagacctgaatccaattgagaacctttgggacgttatgtatcggtgcatccgacgccgccaagtagagccacagactgtccaggagctcactgatgccctgattcaggtctgggaggaaatcccccaggacaccatctgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62727 True 255 lncRNA 0.57 1 4917003 4917257

Neighbor

gene id symbol gene type direction distance location
AMCG00008590 NA coding upstream 12930 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 81347 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 104096 4800454 ~ 4812907 (+)
AMCG00008579 NA coding upstream 404943 4510990 ~ 4512060 (+)
AMCG00008569 NA coding upstream 818847 4097796 ~ 4098156 (+)
AMCG00008593 LOC107093428 coding downstream 125497 5042754 ~ 5055756 (+)
AMCG00008594 NA coding downstream 177107 5094364 ~ 5108804 (+)
AMCG00008601 NA coding downstream 697662 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 827547 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 849507 5766764 ~ 5776682 (+)
G50086 NA non-coding upstream 333798 4582902 ~ 4583205 (+)
G50066 NA non-coding upstream 389451 4515496 ~ 4527552 (+)
G50061 NA non-coding upstream 428765 4487999 ~ 4488238 (+)
G50055 NA non-coding upstream 448240 4462362 ~ 4468763 (+)
G50011 NA non-coding upstream 608167 4307826 ~ 4308836 (+)
G50153 NA non-coding downstream 52752 4970009 ~ 4970248 (+)
G50180 NA non-coding downstream 232211 5149468 ~ 5149857 (+)
G50181 NA non-coding downstream 232638 5149895 ~ 5155484 (+)
G50185 NA non-coding downstream 505566 5422823 ~ 5423045 (+)
G50196 NA non-coding downstream 642764 5560021 ~ 5560609 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 344129 4561991 ~ 4572874 (+)
G49982 NA other upstream 751520 4162058 ~ 4165483 (+)
G49980 NA other upstream 756941 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1031399 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2028107 2886766 ~ 2888896 (+)
G50215 NA other downstream 678766 5596023 ~ 5596799 (+)
G50243 NA other downstream 821284 5738541 ~ 5742750 (+)
G50448 NA other downstream 2040354 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2379629 7296886 ~ 7315850 (+)
G50583 NA other downstream 3016572 7933829 ~ 7939771 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2058382 LOC106613263 non-coding NC_048591.1 CM023245.2 17259154 ~ 17263052 (-)