AMCG00008594


Basic Information

Item Value
gene id AMCG00008594
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5094364 ~ 5108804 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008594
ATGGCAGCAGAGCAGCAGAAAGAGTGCTTATCGAGAGCGCCTCCAATTAGCTGCGGTGTGGAAAAGGTATTTTATCTGAGCACGCGTCTGAAGGCAAGCCTGTGGTGCAGTTCTGAGAAAAGACGAGCGCGAGTGGCTGCTGTAGATAAGCCTCAGGCGGCGGCGGCGGTGCCTGTGACCCCTGCGCTGATTGCGCCCGGCTGTCGGACGCCGAGTCCCCTCCTGGCTGGTGTGTTTGACATCTGCTCCTGTCCCGCAAATCCCTGCTTGCCTTTCAGATCGCAGACATCATTCCGCACTTTTCCCCACAAGCGGGGTCCCTGCGTCACGGTCACGGTCTATTGGTATTCGTACATGTCTGCCATGTCACAGTTGCTCATGATCTCCGCTGTGCTGGAGGACACATGCCGTCATCCTGCCATGACAGGTTGTAGCACTGTGGAAATCTCAACCGTTAAAGTAAATTGCACAgatgtgaaagaaaatgaaaactttaaatattCCGTGAAGGGATATGTGAAGTTAACTGAAGCAAGTATTACTGAAGAGAACTGGTATGAGGGGGATATCTcaattgcttattattattacaatccTATAGTAAAACAGTTCAGTAATGACACTGTAAAGGATATCGGCCCTGGCTATATCATTCTTCGCAACTGTCAGAATGTCAATTACACCATTTTTAATGGAAAGGAGCACAGAATTTACTTCATAGCTTTTGACCCAGGAAATCAGGATGAGAGTCAGATATCACATACATACTGGATAATTGTTGTCTTAATCGCTCTCTGGATCGCCGGGTGCTTTATTTGGATATGTCGACGCAGATCTGTAAAGCTTGAGACCACGGATACAACTGATGAAGCCTCAATGGATCTGCAGGGACCCTGAGACCAAGCATTTAACGAAAATGAGATCTCATCTGGGGAACACTTGTTTGATGATGCGTGGAGctacaaacaaaccaagaaacaacacgctttttgtttcttgtattattattattattattattattattattattattattattattattttatataaaataccaCCAACAGTTTTAAGATTAATTATACTGTTGACCAAACTGGTTGAAATGCAAACATCACACTGGTTGGTAAAAGCCTTTCATTTGCTAGGAACATACTGCTAGTATGTCACTATGTCTCAGggaacagaaaatgtattttgaacacCAAAGCACATTCCTGTTGtataaaatagaatatatatgtatataaaaagattTAAACAAGTGTAAACATCTTGCCgagaccttcatccagcagtgcatgatatatatttatatattttttaaataatgatgatggtgGGGGTTGGTGTTTCCAGGAGGCCGCTCACACattgaatacatattattttaaaaagattatattcataaaggaatacaaatgtattcagtatCTTCAGATAGTGTTCCATAGAAAAGCAGCATTCTGTAGCCAGGTGTCAGCACTCCTGCACTGGCTGCCAATCACAGTAGCCAGCAATAAACACTGCCAGGTCTGGACACATCTGAGGGGGGCACCAAAACCACACTTTGACCCACCTTCCAATCAGGCTTGGATGTGTAACTGGTATGAAGTGACTTCTTACTATAAATTAAACCACGTTCAGGTAAAGATGTGTACTTTGCGATTGGTGGGTCAGTCAGGGTGGTGATTTGGTCTCAGCCcattgttttcttgtgaaaGGGAAACGGGGCTGTCAGTGAGGGATAGCGTGTctaaaatgcagtttgtgtttgaaataaaaccttttgtAATGTACTTGTAAAAAAACGTAGAAAGTCTTTGCACTGaagttctgaaaaaataaaaccggTTGCAGAAATAAAGTCaaggtaattatttaa

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008594 True 1888 mRNA 0.41 9 5094364 5108804

Neighbor

gene id symbol gene type direction distance location
AMCG00008593 LOC107093428 coding upstream 38608 5042754 ~ 5055756 (+)
AMCG00008590 NA coding upstream 190291 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 258708 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 281457 4800454 ~ 4812907 (+)
AMCG00008579 NA coding upstream 582304 4510990 ~ 4512060 (+)
AMCG00008601 NA coding downstream 506115 5614919 ~ 5635748 (+)
AMCG00008606 NA coding downstream 636000 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 657960 5766764 ~ 5776682 (+)
AMCG00008607 NA coding downstream 735541 5844345 ~ 5847681 (+)
AMCG00008604 NA coding downstream 773189 5881993 ~ 5883048 (+)
G50153 NA non-coding upstream 124116 4970009 ~ 4970248 (+)
G50142 NA non-coding upstream 177107 4917003 ~ 4917257 (+)
G50086 NA non-coding upstream 511159 4582902 ~ 4583205 (+)
G50066 NA non-coding upstream 566812 4515496 ~ 4527552 (+)
G50061 NA non-coding upstream 606126 4487999 ~ 4488238 (+)
G50180 NA non-coding downstream 40664 5149468 ~ 5149857 (+)
G50181 NA non-coding downstream 41091 5149895 ~ 5155484 (+)
G50185 NA non-coding downstream 314019 5422823 ~ 5423045 (+)
G50196 NA non-coding downstream 451217 5560021 ~ 5560609 (+)
G50206 NA non-coding downstream 470418 5579222 ~ 5580022 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 521490 4561991 ~ 4572874 (+)
G49982 NA other upstream 928881 4162058 ~ 4165483 (+)
G49980 NA other upstream 934302 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1208760 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 2205468 2886766 ~ 2888896 (+)
G50215 NA other downstream 487219 5596023 ~ 5596799 (+)
G50243 NA other downstream 629737 5738541 ~ 5742750 (+)
G50448 NA other downstream 1848807 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2188082 7296886 ~ 7315850 (+)
G50583 NA other downstream 2825025 7933829 ~ 7939771 (+)

Expression


Co-expression Network