AMCG00009207 (rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652)


Basic Information

Item Value
gene id AMCG00009207
gene name rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28928892 ~ 29011768 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009207
GTGAGGTTGCAGTTGTGGGACACAGCTGGTCAGGAGCGCTTCCGGAGTCTGATTCCTAGCTATATCCGTGACTCCACTGTAGCAGTAGTGGTGTACGACATCACAAATGTGAATTCATTCCAGCAGACTTCGAAATGGATTGACGATGTCAGAACAGAAAGAGGAAGTGATGTCATCATCATGTTAGTGGGCAACAAAACTGATCTGGCAGATAAA
>TU69199
GCCGCGCAGGCGCACAGGCTACAGAAGCTGACAGGCAAGGCAGTGCAGCATTCCTGTCGCTCCGCGGATTTCAGCGCATCTCTGCCCAGCGAGCATCCACTGCCAGTGTACCTGGACCCGGACACCGCAGACCAGGCAGCCCCGCCAGCGAAAACAGAGCCAAACATGTCCGTGGGTGGTGACTTTGGGAATCCTTTAAGAAAATTCAAACTCGTCTTTCTGGGGGAGCAAAGCGttgGGAAGACGTCTCTGATCACAAGGTTCATGTATGACAGCTTTGACAACACGTATCAGGCCACAATTGGAATAGATTTTCTATCAAAAACCATGTACTTAGAAGACCGAACAGTGAGGTTGCAGTTGTGGGACACAGCTGGTCAGGAGCGCTTCCGGAGTCTGATTCCTAGCTATATCCGTGACTCCACTGTAGCAGTAGTGGTGTACGACATCACAAATGTGAATTCATTCCAGCAGACTTCGAAATGGATTGACGATGTCAGAACAGAAAGAGGAAGTGATGTCATCATCATGTTAGTGGGCAACAAAACTGATCTGGCAGATAAAAGGCAAATTACAATTGAAGAAGCTGTTCCGGCGTGTGGCAGCGGCTCTGCCTGGAATGGAAAGCATGCAGGAGCCAAGCAAAGAAGGCATGATTGACATCAAGTTGGACAAACCACAGGAGGCTCCAACCAGTGAAGGTGGTTGTTCCTGTTAATACACATTACTGGATTGGGCAGCTTCATTTACACCACATGCTTGTTGTGTTGCTTCCTATTGGTTAGCTTCCAGTTGAGTTCTCAGATTGGATATTTGGCCTTTTATTTCCATCTGATTATTGACCATTGGTTGTAACTAGTGTTACTTAAAtcttatgttgtaaaataatgtactttacTAACAAAATTGCCAAAAAagtcttaaatatttaaaaaagaaaaaaaaaagtagatgaACTCCAAATATGTGTATACAACGTTTTTGAGAAACTAGAATggtacaattttttttgttttgtatttttgtatacttAAGGAAAAGCACTAAAATAATGCAGACAAAGTGAGACTTCAGCTTGTACAAGATTGAGAAGAATCATAGACAATGGCTTTAACTTCTTGCTTCTGATTGTGTTGGGCACTCTAATTACTACACGGCAACAACTGTTCTTCATTGGCTATCCAAAGTCTGCATGCAAGCagttttcaaaaaataattctgtCTGCCATTGTattcaagttaaatatttaaaagctggTCCCTACCTGTCATTTTATGCATCATGTGGAAGCTTTTCTTGTCAGACATTcctatataaaaacaaaaaaaaaaataatttggataacttctatgaaaatgtttttcttttggtggTATATTTCAATGATGGCTACCTTTACAGacagttttagaaaataatttgcCAACTGTGTCCCTTAAAACAGCCATTGCATTGCATCATTGCTTCTTAATTCTAAGTGGTATTTCACGGATTTTCCAAACACTGCAGTAGTTGATGTGGTATTTAGTACTAACGTGTGGGATGGcccagttttcttttttagttgCAGAATACTACCATCAAAATAGATGTGGGTAGAATCAGAAGGTAAAATATCAAGCCAAGAACAGGTTGcagttttttaataaattatttttatttttaataattctgtTTTAGATTTAAGACTAAATTGTGTTTAGACTTGTTCTGATTGCTAAAATAGTTGTGTATGTCATATCTCTTTAGAGCCAAGTCGTTTCCAGTCTTGTTATCATGTTAACAAGTTCAAATGGAGATAGTAAACTCCTTCACTCCGAGGCATGGAGGAAAGGAATTGCATAGATGTATTGTACCCGGTTATCAAGAGAGTAGGCCAGataatgcaattgcaaaaatgtatatcaaaataaataaatacatcactaTACTGCTTCAACTATGCGATCTGATAGAAACATAGAACTCATCAATAATCCAagccaagacttttttaagtaATCGTGCTATATCAACTATATCTCTTTAATTCAGCAGTATATATCTGGTCACTTGAAGAGGAAGAGTCACAAGGGGGAATGTAGTCAGcaacttttaaacattttattatattttatttttttaggcaAATTAAGATGAAAGATGGATATAAACTGCTTTACATTACCATGATCATTGAATGTTAAGGGTCCAAATCAGTCCTTTGGTTTGTGTCAAAGTCTCTCAGACAGTAATATCTATATTTCAGAATACAGTACTTTGAACTGCCTCATGtcaaatgttgtatttaaagCATGATTCAAAACTCTGGTCCGCCAGTGCTGTGTCAGTGGATTGTAGTGGTGGAATGAATCGGTTTTAATTCCCTTAAACAAAGAATATGCATTCCAATGAAATTAATTGTTGACAAAAGTTTACagatacaataatattaatttagtgATCAATTTGAACATAGTGAATAGGGATATTTACCTGTTTATCCTGGTAATTAAAAAACTAGGAGACTAAAGATAGACAGAGGCTTCTGTGCCAGCTGTCAAACTATTTATGTAATAACGTTCAAACATAAAGCTTTCCCTAGGTAAACCACAAGATTATACATCATGTGTGTATGGGATATGTGGTGTGGttattaaaagttaaattttTGTACAGTGCCAGCAGGAGCAATAATACATAGGCAGTATCGTGGCAACCAGACTGTGTTGAGCAGacaaaaattataatgaaactCAAACAGACAAGTATGTTACCCAAGAAATGTCACAACCTTAGGTAAATCATTACTGCCCCAGAGAAACCGAGTGTAATCTATTAAAAGTACAATGTGCATGAAATGTTAAATACCATAGTTACTAGATACAAACAAACCTTATTTATTATACCTTTTAGGTGATATCGTTTCATGCTTGATCATGAAAAGTAAATAGCTATGAACCTACAACGAACCCCTACGCTATGTATGATCAAGTTACGTGACCTGAAATAAATTgcttattaacattattattattagcctattattTGTGATCTTGATATCAACTAAAGTCGACGCTGTTTAAATGACAGCTATAAGATTTTATATCCAAACTGATTATGAGAATGATGTCCTGTATATTTAACAGTTGAAAAAGGCACAGCTGAACATCCAGTTCTCCCCTGTGCACCTCTTTTGTGAAGGTAAATGAAATCCATTCAGTCAAAGAGTATGTTTCAGGGTTTGTTTTAGGAGTTGTAAGCCTAGTAGTTAAGACAAAGATGATGAATTGATGTTGGGAGGATTCCCGAAATGAGAAAATATAGGTTGGTGTTCAGAGCTCCAAATCAATTTACAGCTGTGAGACTAAAATAGTGTTGAGTATATCTACACTGTCCAGACCACAGCACTTTTCTGTTTGTAGCCTGTATTACTGACATGTAAGTTTAGcccaatttatttaattgtattggtCATTGTAAAACAGGGTTTActtgttttctaaattattGCTCATATCACTGTCTTGTAGGTGTGTATTTGGTTTTCCGTTCTTATTGCACTTGTTAAAAGTGCCACCACCTAGTGCATTAGAAACTGTTGTGGTACTGTGGAAGATAAAATATGTCCTACAGTTGTTAATTTTCCGGTCTATGGCTGTAAttcttggggaaaaaatgaatgacACTAGGAATtcttattttctccagattgACAGTGTTCTtcgatttttttaaataaagaaattatatatatgttttatttaattcagacaaTTCCATTAGATTTGTCCTTTAATGCACTTTATCAGTTATACTGATTTATGattaatgtagaaaattaattgtatttcccATTGAAAGTCCAAATTTAATCCTAGAGGGTTTTTTGGCTTAAAATGAAATTTTTGTCTCTTGGCAAGAGCCCTTTCCCATTTCTCAAAAAGaagcagtttaaaatgtgtgctcATTTATTATCTACAAATCATGTATATCCCATAACCAGAATATGGCAACAGAGTACACTGGTAAAcatatttgagtttttttttgtttttttcattattattattttcaatgtatttatttgtatttagaaaaaaaactgtatgaaactcaaattaagaaatgtaatgggCTGTCCATTGAAATTAAATCTATAGATTATCGAAATGCCAATTTGGTTTTAAGGGCTTGGtcaacattacattaaaaacagtacatAATGTTGTTCTCTGCAAACTCCTTTTTGCTTCTTCTCTTGACCCGAATATTATAGCAATGAATTCAAAATGAgttcaaaaacaaatggaaactgtttgcttttttatatatgaattacTATTTGTTaacttgtttaaatataaacccAACTAAACACTAAACTATAATTTGCCAGAAGATTTGGATCTATGCTATCTACTCCCACTAGTTGCTAACTCATACTGATAGCATTCCCGCACCTTAATAATATAGGCATTAAGTGATAACTATTGAGAATTCTgtctgtattgatttaaaattcccataacaattttttttttttttcggttaGTTGTAAAAGGAAGAGCCTTATAAATCCACATACTTAAGTTAGAGCTTAGTAAAATCTCTGTAATGTTGGCCATTGAGAAATTAGGACACTTGTTTCTTAAAAGAAtgcaatgcaaatatataaatcctTGTTTAAGATTCTCTTATTGGAGtctaataaatgtttaatgaaatatgtatcaatattccatttaaattaaacactacTGCAGgcattttcaaaaaatgaattcaaCATACATATCTGTATATTACCATATATCAAACTTTATCAGGAGGCAGGCATAATCAATGCTTAATTCCCCCTCTGTAGACAATATTGTCCTTTTTACTTGTTTACCAGTGTcttctacaaaaaaataaatttgtttaacaaaagtATTACTTTGAAGGCACCCCAATAAGAAAGGTGTGGGTTGCCTTTTTGCTTTAGAGAATGTCTTACTGGAAATAGTTGTCGAATTTTATTCAgttaatttacatataaaaatatgtatatgaataacAATTAATATTAACTCGGAATAAAAATCCTAACCTTTCACTACATCCAAGACAAAACATCTAATCGGgaacctgtaaaaaaaaaaaaaaaaaaaaatcacgtcACGTCTTCATGTATTATGGAAAGTTGGTATACAGTCCTTCAGTGTAattttacagtatataatttCTGCATGTTTCTACTGATATTTCGTCTTGTTAAGGAAATGATGGCTTGCTGTTTCTGCTGTACAGTGAAGCCCCCGAGTGTAGCCTCAACACAACAGTGTTTTGAtcgaaaaagaaaatggaaaaaagaaaatcacatatAAATGTTTCCGTTTCTTGGTTTATAATGATTAAAAGGCTATTGTTTTTAGTGCTTCAGTTGCCTTTAACATAGCTGTTGGTCATGCTGTTGCGctgatcaaatgttttttaaaaagcatatatatttttgatctTATAATGACCGTTTGCCTTTACTTTTGTTGCTGCCTAAGAAGACTACAGGATCAGAGTTAGCCCTGACAGCAAAGGAGAAGTAGAGTAGTCAGGCTTTCCCGGCAAGCCAATTCGGAGGCCTTGTAAAGTATCGCTTAACATTTCCACATTGGTAGTCAGGAAAGCTTAAGTAGCCCTCCACGTTAAGATCTGTGTGatcaccattttttttttattttattattgttttgtttagtttgtttgtttacttggtATTTAATTACACTGGTGCCTTCTTAGACCACACAAAGGCATGATGGGCAGTCTGTGCACCAAGTGAGCTGACCTGCTAATGTGTataggggttgggggggtggggggtatttatttattgaactgattgactgattgattaacGTATGTACTTGACTACATTTGTTAACTGTTACTTGAGTGTATCAGACTTAATGAGCTGGTGTAGTGGCAAGGCTTTAGAATAGTACCCACTTGTTTGTCAACAGTACTCTATAAGAGCTAGTCGACATTGATATCACTGTATATTTCACTAGGTTAGGGACAAGGGGACCTCAGTACTGGACACTCCTGCTGTGGGTGAGGTCATTTCAGATGTAAATGTTACAGCTCTGTGGAGCAGACCTGACAGATTCAGAGCTGGCTCTTCATTCACAATGTATAGAGATTTAGCATGTCTGTCTAAAAGACcaataaaaaatgtcttattACCAAATGCTA

Function

symbol description
rab6ba Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
rab6b Enables myosin V binding activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Located in Golgi apparatus.

NR:

description
PREDICTED: ras-related protein Rab-6B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009207 False 216 mRNA 0.46 2 28982329 28984320
TU69199 True 6214 TUCP 0.35 8 28928892 29011768

Neighbor

gene id symbol gene type direction distance location
AMCG00009206 NA coding upstream 2064 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 35848 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 92480 28802969 ~ 28836412 (+)
AMCG00009198 NA coding upstream 166374 28756555 ~ 28762518 (+)
AMCG00009200 espnl coding upstream 173718 28736283 ~ 28755174 (+)
AMCG00009202 NA coding downstream 2624 29014392 ~ 29019892 (+)
AMCG00009214 LOC106599142 coding downstream 63313 29075081 ~ 29102077 (+)
AMCG00009221 NA coding downstream 297088 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 354870 29366638 ~ 29402226 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 404668 29416436 ~ 29419290 (+)
G55357 NA non-coding upstream 30199 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 295560 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 298595 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 463666 28464562 ~ 28465226 (+)
G55205 NA non-coding upstream 545389 28383000 ~ 28383503 (+)
G55394 NA non-coding downstream 17550 29029318 ~ 29031478 (+)
G55461 NA non-coding downstream 173153 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 174926 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 446653 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 629721 29641489 ~ 29641936 (+)
AMCG00009204 NA other upstream 129292 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1302881 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 2132124 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3341277 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 3435319 25489711 ~ 25493573 (+)
AMCG00009208 NA other downstream 91840 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 159555 29171323 ~ 29174731 (+)
G55573 NA other downstream 896143 29907911 ~ 29911564 (+)
G55591 NA other downstream 983358 29995126 ~ 29995438 (+)
G56060 NA other downstream 3149992 32161760 ~ 32165365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G488259 NA non-coding CI01000340 null 2658651 ~ 2751966 (-)