AMCG00010465 (LOC101168844,LOC107578573)


Basic Information

Item Value
gene id AMCG00010465
gene name LOC101168844,LOC107578573
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 30649902 ~ 30666918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010465
TGCATGTCTGAGAGGGAAGGGATATATCGGAACACAGGAAGCTGTGCACCGGCTTTTGTCAATGTAACGCTGTGCGAAGTACAGCAATTTTAAGTTATAATGACCAGACTGGGCAGTGGATATTAAATAACAGTGGCTGTTACtgtcagtttattttactgGTACTCTACTATTAAAGTCAAgCATCCTGGATTCCCCTTGATGCAGAAATGGACGAtgttttagtggaagaagatgACGACTGTCCTGAGCTGATTCCTATTGAGAGGAAGTCAAACACCGCAGCAGATCAAATACCAGTGACAATCATTACTGGGTATTTGGGTTCTGGAAAGACGACTCTTTTGAATTACATATTAACAGAGCAGCACAACAAGAGAATTGCAGTTATACTGAATGAGTTTGGGGAAGgaaGCGCTCTGGAGAAATCCTTATCAGTGAGTCAAGCTGGGGAACTGTATGAAGAATGGTTAGAGCTGCGCAATGGCTGTCTCTGCTGTTCAGTCAAGGACAATGGTTTGAAAGCGATCGAGAATCTTATGCAGAAGAAAGGAAAATTTGACTATATTCTCCTGGAAACCACAGGATTAGCAGATCCAGGAACTGTTGCTTCTATGTTTTGGGTTGATGCTGAACTGGGAAGCGATATCTATCTTGACGGCATTGTAACAGTCATTGATGCAAAGTACGGCATGCAGCATCTTACTGAAGAGAAACCAGATGGACTGATAAATGAAGCAGCCAGgTCAATAAATGGACTGGTCAGAATTTTAGAAACTCAGAAGTCAAGAGTTGACCTGTCCAGTGTTTTGGATCTTCACTCATTTGATAGTAAATCTGGAGCAAGTTTACAGGAAAAGCTGCATCAAATGCAGACGACACAGCCACATCTAGACAAGAGTATTCTCACGGTAACatttgaagtacctgggagcgTTTCAGAAGaatgtttaaatttgtatattCAGaacattttgTGGGAGAAGACTGTTAAGAACAAAGCTGGTGTGTTAATGAAGATCATTCGATTAAAGGGGATCGTTTCCATAGAAGACAAGCCACAGCAGATGATACTACAGGGTGTTCATGAACTATATGACCTGGAAGAAACTCCACAGATATGGGATGACCCAGAGCCCAGAATCAACAGACTGGTGTTCATAGGTAAAAATCTTGATAAGAGTATCCTCAAGGATCTATTCATTTCAACAGTTCTCAACCAACAAAGCAGTGACTAGCCAAAGGACTTCTGTGTGATTCGCATCCATATGGtaaacagaagacaaattaGTAGCAGGGAAGGAGTTAAACATCCTTTTAGTAAGTGTTTTAAAGCTATATTACTTCAGAAGAAGAATATATCTAGAACTatagttaaaatgaaaaaaatgttatcaaaaggtaaagagagaataaatacatgttgtttactttacatttacattattttcaaataaacttaaaaaaacctGTCTTAAACACAATCTTGTAAGTCCTTTCTGCATTGGTTTTTGTAACATGACGcttctaaataaaaacataatttaaattcattgtTGAATGTAA

Function

NR:

description
COBW domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010465 True 1566 mRNA 0.39 15 30649902 30666918

Neighbor

gene id symbol gene type direction distance location
AMCG00010466 NA coding downstream 3528 30645325 ~ 30646374 (-)
AMCG00010464 pgm5,LOC108442998,LOC106580555 coding downstream 8303 30635230 ~ 30641599 (-)
AMCG00010462 pgm5,LOC108265775,LOC108442998,LOC107724919,LOC107711872,LOC107689271,LOC107602821,LOC107600012 coding downstream 26217 30616297 ~ 30623685 (-)
AMCG00010461 pip5k1bb,LOC106585038,LOC105901155,LOC105014287 coding downstream 98651 30545505 ~ 30551251 (-)
AMCG00010459 NA coding downstream 116236 30522256 ~ 30533666 (-)
AMCG00010471 NA coding upstream 147613 30814531 ~ 30839361 (-)
AMCG00010472 ptch1 coding upstream 201335 30868253 ~ 30914463 (-)
AMCG00010473 ptch1,LOC107724865,LOC107669660,LOC107689274,LOC107711868 coding upstream 262876 30929794 ~ 30931372 (-)
AMCG00010479 NA coding upstream 365186 31032104 ~ 31072225 (-)
AMCG00010482 LOC106585187 coding upstream 423166 31090084 ~ 31106504 (-)
G80862 NA non-coding downstream 45152 30604514 ~ 30604750 (-)
G80786 NA non-coding downstream 264655 30346465 ~ 30385247 (-)
G80778 NA non-coding downstream 378237 30224925 ~ 30271665 (-)
G80777 NA non-coding downstream 390594 30253795 ~ 30259308 (-)
G80725 NA non-coding downstream 546255 30103409 ~ 30103647 (-)
G80901 NA non-coding upstream 67866 30734784 ~ 30737394 (-)
G81116 NA non-coding upstream 1800957 32467875 ~ 32468256 (-)
G81138 NA non-coding upstream 1858760 32525678 ~ 32530211 (-)
G81157 NA non-coding upstream 1893093 32560011 ~ 32591606 (-)
G81258 NA non-coding upstream 2487234 33154152 ~ 33155346 (-)
AMCG00010458 LOC107396140 other downstream 129521 30510970 ~ 30520381 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other downstream 688578 29952690 ~ 29961324 (-)
AMCG00010371 NA other downstream 4223244 26412210 ~ 26426658 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other downstream 4270155 26367932 ~ 26379747 (-)
AMCG00010343 hook3 other downstream 5093822 25516064 ~ 25556080 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 405534 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 1287452 31954370 ~ 31997694 (-)
AMCG00010509 fem1c,LOC106580179 other upstream 2326369 32993287 ~ 32999999 (-)
AMCG00010532 ppic,LOC107713556 other upstream 3431428 34098346 ~ 34104672 (-)
G81716 NA other upstream 5048033 35714951 ~ 35716672 (-)

Expression


Co-expression Network