AMCG00011063


Basic Information

Item Value
gene id AMCG00011063
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9459334 ~ 9467512 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011063
gggaggtgcgCAGCTGCGATGCCTGCGATCGCTTACCTGCCACAGCGCACAGGCAAGTgcttcctgcagcagcagccCGGGGCAGGGTGAGAGGTCAGTGCCGGAGACTCGGCTCTCTCCGCCGCCGCAGCCCGTTACAATGTGACCCGACCGGCGCTTCCCATCCTCGCCACTGTGACCAGCCCGAGCAGCCCGGGTCTCCGCGCATGGTGGGGGCGACTGAAGCGCGCAAGGACGGTGTGTGCGGCTGGGCCGGATCTCCCGGGGAGGACGCCGCTCGGCTGCCGCACAGCCTGTCACTCCGGCTGCGGGGAGATGCCAGGATGGAGTGCTGTCCAGACGAACCCCGCTACACCATTGAGCAGATTGACCTGCTGCAGCGCCTGCGCCTGTCAGGGATGTCTAAGCCTCAGATCCTCCATGCCCTGGACTCCCTGGAGCGCCTCGATTCCGAGCAGAGCCACAATTTCCCCCGGGAACGGCCTCCGTGCTGTGAAAGCCACGGCAGCGGCCCTGCCGCCCCCGTCGCTGTtgcttcatcctcctcctccacgTCCTCTCTCACCTCGGCAACCACTCAGACCCAGAGCCTGGCCGCCTCCCCATCACCGAGCAACAGCTACGAggcctccccccctcccctgtaCCCTGCCAACGGGGGTCAGAGGTCGTTCAACTATGACCTTGCTGAGGAGGACTGGGATGTAGAGGAGAAAGTAGAAGAATACATGAGGAGGGACAGCAACATGGTGAAGGAGGAGATCAAAGTGTTCCTCAACAACAGGAGGATCTCACAGGCCATTGTGGGACAAGTCACAGGGATCAGTCAGAGCTATATATCCCAGTGGTTGCTGCAGCAGGGCCTGGAAATGAGTGACCCCAAGAGGAGAGCTTTCTACCGCTGGTACCTCTTAGAGCGCAATAGTCCCGGAGCCACACTGTCGCTGCGTCCCCTGGTGAAAGAGGAGCCGGAGTGGCGGCCCAACAGCAGCCCTGGGGGAGGCGGGACTGGGGGCGGGGGTCTGAGACTGCGCAGAGGGAGTCGCTTCACCTGGAGGAAGGAGTGCCTGTCCGTAATGGAGAGTTTCTTCATAGAGAATCAGTACCCTGATGAGGCAAAGAGAGAGGAGATTGCCAGTGCCTGTAACGTGGTCATACAGAAACCAGGCTGCAAGCTCTCGGAATTCGAGCGCGTCACAGCTCTGAAGGTGTACAACTGGTTCGCAAACCGCCGAAAGGAGATGAAGAGGCGTGCTAATATTGAAGCTGCAATTCTTGAGAGCCATGGAATTGAAGTCCAAAGCCCCAGCTGTCATTCAAATGGTGATGAGATTGAGGTGCCAGAGTTCAATGAACAGGAAGACATTTCTTCCAGGAAAGATCCTGAGCAACAGCCAGTCTCATTGGTTGCTGAGGTGGAGACACTCCACAGCCCCACCTTGATCTTGGCCAATCAGAAGGCAGGAGAGTTAAAGAGGGAGGCAGCTGATGAGGAGTGACAGCCAGAATGGACCAATGGCTGGGAAACACAGGGGTGCAGACCAATCCCACAGGCTGTGACTCAAAGCTCCTCCCATGATGCCTCAAGAGGGCAAGGCGAGCTATCGTTGCACGAGGAATTCCCTCTGCACTGTCAGTGGCAGGGAGGCCACCGTATGTAATTACGATAATTATACTAATAGTAATGGCAACAGTAACAATATTAATCTCTATATAGTGCATTCCAGGATTGTCTTAAGAATTGCTCCTTGACAGGAGAGGGACGCATGGTGTAGGGTCTGGGATTGCAGGAGAGAGCCCAGCTACAGCTTTATCATTGTGACCCGCACGTAGTTTACCTTTTTGCTGTCCTCAGCTTTACAGCTCCGTAAACGATGGCTTTGTGTGCACTGCAAAATCACAGCAGCCTtgaatagtattttttatttgaactcTCAGTAAGTTAAGTGGGAACCTGCAGGACAGGGAAATATTTGGAATTAGGAAAATGAACTGTCTTCTGTGTGGTTAGTCTGTTAGGCTTTCGTCATGGCTGAGGGCCATGAGTCTTGCAGCTCCCTCTGGATGATTTTAGTCCCACCAGGAACTAAACTTTATGAATAATGGGAAAATACATGACTCAGTGGAGATGAAATCTCAGGTAACGTTATTTCAGACAGAAGAAGGAAATGATAGGAGACTATAATGTAGCAGCAACCTTGGTGCTAAATACTGGTTGACTAAAACGAACTGCTTTTAATTTTACGGATGTTTTGTGTGGAATTTACAAAGTACTTTTTCCAAGTAGCAGCGTTTATATATGAGGGTTTAACTTCCCTCCTAATGGCACCACTGTCAGAGCCAACCATACGTCTTAAAACAGGGTTGGTAGTGCAAGTAATTTATTATGAGCAAGGAAGAATGTATGACCCATGTGGCTTCCTAATGGCCAATATGTAGCCAGGACCTAATTTCAGCTATATTCTCCATCTCTGTATTTCACTATGCTGCGAAACTCTagaaaacagtgtttaaaaagcAGGAAAACCATACCAGCACTGACGCATATTTTATGTGGTTTGACCATTTGACCGATAATGTGCAGATGTGTTACTGTGCTTTTATGCATCTTATCTTGCAAATCACATAAATAGCtgctaatacaaatataacttaAATTAGTGCAAAGAGCATACCCTTTCAAATGCTATGTTATTTTGATgtaatagtttttctttgtatGGATGTAACATGGATAGTATATCTCTAAAGGGCAAAGAAATCCAAGAATGGGTTAGATTTTAACCGCAGGTAAAGAAAACGGTACGAAAATAACACTATCAAAGAATGCAGTGTTTAAAGCGCTTTTTCAGGGAGAGGCTATTCTTAGTGCAGTACATGCCTGCTTCAATTTGATTAACCAGGGAATATACTGCAGTGTATATACTGTCAAAAGCCGAAACAACCAGTGCACCTCTCTCGATTAGTCTGCTTATATGAATGGAGGAAGAACTAAAGGTTACTGGAGTGAAGTTATTCTAAcataccatttaaaaacaatacataagaaGACGAAATAAAGATAACATTTAATGAACCATCTCTGCCCTGATTACTGTATCATAACAGGTATTTTCTTATTAGATGCTGCGGTCacctgaaaataaactgaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011063 True 3153 mRNA 0.49 10 9459334 9467512

Neighbor

gene id symbol gene type direction distance location
AMCG00011067 NA coding upstream 19543 9435209 ~ 9439791 (+)
AMCG00011066 NA coding upstream 29254 9425182 ~ 9430080 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding upstream 50320 9391398 ~ 9409014 (+)
AMCG00011074 NA coding upstream 68233 9344531 ~ 9391101 (+)
AMCG00011064 NA coding upstream 114921 9326329 ~ 9344413 (+)
AMCG00011075 NA coding downstream 84292 9551804 ~ 9557387 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 99008 9566520 ~ 9574704 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding downstream 107617 9575129 ~ 9581745 (+)
AMCG00011079 NA coding downstream 123560 9591072 ~ 9592187 (+)
AMCG00011082 NA coding downstream 256298 9723810 ~ 9732443 (+)
G104115 NA non-coding upstream 106747 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 233156 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 300115 9158321 ~ 9159219 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 488564 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 510511 8947773 ~ 8948823 (+)
G104147 NA non-coding downstream 6662 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 10055 9477567 ~ 9481674 (+)
G104204 NA non-coding downstream 225632 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 405141 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 1088217 10555729 ~ 10617196 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 906729 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2355826 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2538403 6892397 ~ 6920931 (+)
G103542 NA other upstream 2816706 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 3063850 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 62962 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 736105 10203617 ~ 10271863 (+)
G104273 NA other downstream 1351176 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2176505 11644017 ~ 11651021 (+)
G104382 NA other downstream 2198686 11666198 ~ 11671340 (+)

Expression


Co-expression Network