AMCG00011079


Basic Information

Item Value
gene id AMCG00011079
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9591072 ~ 9592187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011079
ATGAAAATTGAGAACAACACTTGTTTATTGGTCCCTGACAATATGACGACAATGCCATCCCCGGCCCTTTCTGAGGCCAATGACGCTGTTTCCTTCCTTGTGATGCCACTGGTCTATGCCCTGGTGTTTGGGCTGGGGTTGCCGGGCAACATTATGGCCCTGCTGGTGTTCTCCAGGGACAGGAAGTGGCTGAAGAAAGCCGTGCGTGTCTACCTGATCAACCTGACTGTGGCCGACCTCCTGTTCAACCTTACCCTGCCCTTCTGGGTGTCCTACTACGCCAGAGGGGGCCATTGGCTGTTTGGGGAGGTTAGCTGCCGGCTGGTGGGCTCCCTCTACTACCTGTCCACCTACTGCACCATCACCTTCATGACCCTCATCAGCCTAGATCGCTACTGCACGCTGCGGACGAGATGGACCAGGCTTCCCATGCTTCGGCAGAGAGGGGCGACCGTCTTGTGTATCCTAATCTGGGCTTTCTGGTTATCTGGTGCCATACCCACCCTGACAATGCAACAGGGCTTCTCCAACAACCCAGGGCAAAAGTCCCAGACCAAGTGCTTCGAGAGCATGTCCCAGGAGCATGTCTACTCCCTGGTTGTGTGTACCTTCTTTGCTGTCTCCTTCCTCATCGTCCTGCTCTCCTATGTGTCCATCATATGGTCCCTGGGAATGCGACAGGACCATCGCGTTGGCTCTCACCGGCTGCAGGCCAAAGCCATGGTGCTGGGCATGCTCCTGGTCTTCTTGTTGTGTGTGGCACCCTTCCACATCACCTTGGGACTGAGGGTGCTGCTGACATGGGATGACCACGCCCCCTACGCCATGGACATCCTGCATCGCATCAACACAGCCCTCCTGAGCATCAACAGCTGCATCGACCCCTTCATCTACTGCTTCTCTCTGCGCCACTTCCGCTCCGAGCTGAGGGTGCTGTGGCAGGACATGGGTCAGGCCCTGCTGCACACCCCCTCTGCGGCCCGGGATACCCCATCCCACAGACAGCCTGCCCTTGGTGGGGAGCCATTTAATGTGCTGAAGGCCAGGTTCACTAGCATCTCCACCAGCACCAGCTCAACTTCTAGACCAGTAGACATTCTTCACTGGGGCTCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011079 True 1116 mRNA 0.57 1 9591072 9592187

Neighbor

gene id symbol gene type direction distance location
AMCG00011080 gale,LOC107583591,LOC107721820 coding upstream 9327 9575129 ~ 9581745 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding upstream 16368 9566520 ~ 9574704 (+)
AMCG00011075 NA coding upstream 33685 9551804 ~ 9557387 (+)
AMCG00011063 NA coding upstream 123560 9459334 ~ 9467512 (+)
AMCG00011067 NA coding upstream 151281 9435209 ~ 9439791 (+)
AMCG00011082 NA coding downstream 131623 9723810 ~ 9732443 (+)
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding downstream 426375 10018562 ~ 10018933 (+)
AMCG00011088 csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197 coding downstream 481535 10073722 ~ 10087704 (+)
AMCG00011090 csmd2 coding downstream 547274 10139461 ~ 10192241 (+)
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding downstream 906290 10498477 ~ 10503466 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 109398 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 115229 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 238485 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 364894 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 431853 9158321 ~ 9159219 (+)
G104204 NA non-coding downstream 100957 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 280466 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 963542 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 1131363 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1780367 11372554 ~ 11377085 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 41552 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 1038467 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2487564 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2670141 6892397 ~ 6920931 (+)
G103542 NA other upstream 2948444 6641983 ~ 6642628 (+)
AMCG00011089 csmd2 other downstream 611430 10203617 ~ 10271863 (+)
G104273 NA other downstream 1226501 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2051830 11644017 ~ 11651021 (+)
G104382 NA other downstream 2074011 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 2216659 11808846 ~ 11810822 (+)

Expression


Co-expression Network