AMCG00011075


Basic Information

Item Value
gene id AMCG00011075
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9551804 ~ 9557387 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011075
ACTTCAGTCACATGACTTGAAGTTCAGCTTCCACCGGCTGAGCGCCCCATTTCTATATAAATAGGAAGACAAAATCGTCATTATCTTTGCATATTGCAGAAGGCTGGGCTTTGGAGTGGGTGACATTGCACACATTTCTGACGACGTAGGTTTTGTCTGGATCTTGTTATAGCTGTGCATCGGTCCACAATGGCAGTCCCCCAGGTGCAGCTCTGGATCGGTCTCTTGTTGGCCGAAGCAGCCGTCCTGCCCGGGGGAGGACAGGCTCGGTTCACCCCTGACTGGGACAGCCTGGACGCTAGACCCCTGCCGGCCTGGTACGACGAGTCCAAGTTCGGGATCTTCGTGCACTGGGGAGTGTTTGCGGTGCCGGGCTTCGGGAGCGAGTGGTTTTGGTGGCATTGGCAGGGCACGCACGACAGGGATTATGTGGACTTCATGAAGAGAAATTACCCACCCAACTTCAGCTACTCGGATTTTGCACCCCAGTTCCGAGCCCAGTTCTTCGATCCGGAACAATGGGCTGATGTGTTCCAGGCTTCCGGGGCGAAGTATGTGGTTCTTACCAGCAAGCATCACGAGGGCTTCACCAACTGGGGCTCGGCCCAGTCCTGGAACTGGAACTCTGTGGACACGGGGCCGCACAGGGATCTGGTGGGGGACCTGGGGGCCGCGCTGAGTAAGAGGTCTCTGCACTACGGACTGTATCACTCCCTCTATGAGTGGTTCCACCCCCTCTACCTCGCTGATAAAAAGGCCGGCTTTAAGACCCAGGAGTTTGTCTCGCGTAAAACCTTACCAGAGCTTTATGACCTTGTCTCCAGGTACAAGCCAGACCTGATCTGGTCCGATGGGGACTGGGAGGCCCCCGATTCCTACTGGAACTCCACCCAGTTCCTGGCCTGGCTCTACAATGACAGCCCTGTCAAGGACTCGGTGGTTACGAACGATCGCTGGGGGGCGGGGTGTTCCTGTAAACACGGTGGCTATTATAACTGCGAGGACAAGTACACTCCAGGACAGCTGCCCAAGCACAAGTGGGAGAAGTGCACCTCTGTGGACCAGCTGTCCTGGGGCAATCGCAAAAACATGAGACTGGACCAGCTGCTGGACCTGCCCACAATCATCAAGGACCTAATGTGGACCGTGAGTCTGGGAGGGAACTACCTACTGAATGTGGGCCCGACGGCGGATGGCACCCTGCCCGTGGCGTTTGAGGAGCGCCTGCGTGGCGTGGGCGACTGGCTGAGGGTGAACGGGGAGGCTGTGTACGGCTCCCAGCCCTGGAGAGTGCAGATCGAAAACGCTACTCTAACTATCTGCTACAGTGCTAAAGGCTCGCAGGTGTTTGCAGTCTTCTTCCAGTGGCCGTCGGACTTCACGCTGCGCCTCACTGTGCCGAAAACCTCCCCCTCTACCAACGTGACCTTACTAGGGTACCCCAAGCCCTTGAAGTGGACCCCCTTGCATCAGACCGGCCTCTCTGTGCTCctcccctccctgcctcccccGGCCCCATCGGCCTGGACACTGAAACTACAGGGGGTGCAGTGAAcaacacacagagcagcagcTGCCGTTGTGAATGTTACTTGCAAGATTAAATGTAACTTGGGCTTTAAAAGCCCTCCCTTCCCTGtaaggataaaaacaaaacaaattaagccTTTGACTCACTTAAAATAACCGGTAATTTCTGCTTCCTGCTCACAGGATCTATATAGTGATCCtatgtacatttgtatgtttGAGCATCCATTTGCTCACATGCAGAATTAGTATTAAATGAGTCAGACTAATTACTGTGTTCTGAAATgtggtttgtttgatttctgCAGGTggtattataaaatgaaatgtcactgatttgtaattattcaatgttttatttgtatttttttttaattacaaaaataactttaccttttatgtgtatgtttttgtttttaaataattttaaagccCTAGTAAGCTTTTATGCCGTGCTTTTTATATTGGTACAGTTTagatgaaatgcaaaaataaataggatAGGGTGTGCTTATCCCAGTGTTTTTAGAACAGGCAATTGTATGAGTTTCTTATGCTTCAATGCCTTGTGACCTCTTGTTGATGCTTATTTGATTAGTATTTCATAATTAGAATTGGTCTGATGGGATTAAACGTTCAAAACACAGCAGCGGGATCACCCGGTGTGTTGAAAACCTGTGCAGATTTCTTGCTGGATATCAAAATACAATCCACTTTATTGCTCCGATCACTACAGAAGAAGAGAAGGATGCacagtcctggagagcccctctccagcaggtttgagaggtcacccttctattgccaatttataaacacctggaagtatttcagtctGATCAGTGAAGCTTTGGTTAggtaaattcagtaatttagaaaccatttaAGCAATTATcagaatacctgcagcctctctGAGCAAGAGCTCCCTTggttgatttgcttaattgattaataacgcACACGTGGTCCTACTATTTAggaattggtgatttagggtgacctataagatgaactggattggggctctccaggaccagggttggagacccctgatGTACAGAATAGTTTGCTTACTGCAGCtgttactgaaaaacaaaaat

Function

GO:

id name namespace
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0042806 fucose binding molecular_function

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011075 True 2633 mRNA 0.49 9 9551804 9557387

Neighbor

gene id symbol gene type direction distance location
AMCG00011063 NA coding upstream 84292 9459334 ~ 9467512 (+)
AMCG00011067 NA coding upstream 112013 9435209 ~ 9439791 (+)
AMCG00011066 NA coding upstream 121724 9425182 ~ 9430080 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding upstream 142790 9391398 ~ 9409014 (+)
AMCG00011074 NA coding upstream 160703 9344531 ~ 9391101 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 9133 9566520 ~ 9574704 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding downstream 17742 9575129 ~ 9581745 (+)
AMCG00011079 NA coding downstream 33685 9591072 ~ 9592187 (+)
AMCG00011082 NA coding downstream 166423 9723810 ~ 9732443 (+)
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding downstream 461175 10018562 ~ 10018933 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 70130 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 75961 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 199217 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 325626 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 392585 9158321 ~ 9159219 (+)
G104204 NA non-coding downstream 135757 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 315266 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 998342 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 1166163 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1815167 11372554 ~ 11377085 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 2284 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 999199 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2448296 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2630873 6892397 ~ 6920931 (+)
G103542 NA other upstream 2909176 6641983 ~ 6642628 (+)
AMCG00011089 csmd2 other downstream 646230 10203617 ~ 10271863 (+)
G104273 NA other downstream 1261301 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2086630 11644017 ~ 11651021 (+)
G104382 NA other downstream 2108811 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 2251459 11808846 ~ 11810822 (+)

Expression


Co-expression Network