AMCG00011065 (hpca,LOC105005722,LOC103394251,LOC101072338)


Basic Information

Item Value
gene id AMCG00011065
gene name hpca,LOC105005722,LOC103394251,LOC101072338
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9391398 ~ 9409014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011065
atggGGGGAGCCGAGGTGAAGTGGCGAGCACACAGGGCCCAGCAGCTGGATCACGCTCAGAGACCCGACACCATGGGAAAGCAGAACAGCAAATTGCGGCCAGAGATGCTGCAGGACCTGAGGGAGAATACAGACTTCTCTGACCATGAGCTGCAGGAGTGGTACAAGGGCTTTCTGAAGGACTGCCCGAGCGGCACGCTGACAGTGGAGGAGTTCAAGAAGATCTATGCCAACTTTTTTCCCTACGGCGACGCCTCTAAATTCGCAGAGCACGTCTTCCGCACCTTCGACACCAACAACGATGGCACCATCGACTTCCGGGAGTTCATCATCGCGCTCAGTGTCACGTCCCGTGGCAAGCTGGAGCAGAAGCTGAAGTGGGCGTTCAGCATGTCAGATCCAGGATGTGACTTGtctccttcctctctccagGCCATCTACAAGATGGTGTCCTCAGTGATGAAGATGCCAGAGGATGAGTCGACACCAGAGAAACGAACAGACAAAATCTTCAGGCAGATGGACCTGAACAATGATGGCAAACTGTCCCTGGAGGAGTTTATCAAAGGTGCCAAAAGCGACCCTTCCATTGTCCGGCTACTGCAATGTGACCCCAGCAGCGCCTCGCAGTTCTGA

Function

symbol description
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

NR:

description
PREDICTED: hippocalcin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011065 True 636 mRNA 0.55 5 9391398 9409014

Neighbor

gene id symbol gene type direction distance location
AMCG00011074 NA coding upstream 297 9344531 ~ 9391101 (+)
AMCG00011064 NA coding upstream 46985 9326329 ~ 9344413 (+)
AMCG00011062 NA coding upstream 93747 9292633 ~ 9297651 (+)
AMCG00011055 NA coding upstream 236219 9141598 ~ 9155179 (+)
AMCG00011056 runx3,LOC106610817 coding upstream 264813 9122397 ~ 9126585 (+)
AMCG00011066 NA coding downstream 16168 9425182 ~ 9430080 (+)
AMCG00011067 NA coding downstream 26195 9435209 ~ 9439791 (+)
AMCG00011063 NA coding downstream 50320 9459334 ~ 9467512 (+)
AMCG00011075 NA coding downstream 142790 9551804 ~ 9557387 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 157506 9566520 ~ 9574704 (+)
G104115 NA non-coding upstream 38811 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 165220 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 232179 9158321 ~ 9159219 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 420628 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 442575 8947773 ~ 8948823 (+)
G104147 NA non-coding downstream 65160 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 68553 9477567 ~ 9481674 (+)
G104204 NA non-coding downstream 284130 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 463639 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 1146715 10555729 ~ 10617196 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 838793 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2287890 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2470467 6892397 ~ 6920931 (+)
G103542 NA other upstream 2748770 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2995914 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 121460 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 794603 10203617 ~ 10271863 (+)
G104273 NA other downstream 1409674 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2235003 11644017 ~ 11651021 (+)
G104382 NA other downstream 2257184 11666198 ~ 11671340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_09410080_09416286 NCALDA, NCALDB, HPCAL1, NCALD.L, NCALD coding CI01000016 null 9409906 ~ 9417767 (-)