AMCG00015320 (LOC107707189)


Basic Information

Item Value
gene id AMCG00015320
gene name LOC107707189
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7821194 ~ 7825760 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015320
ATGGCCGAAGCAATCCAGAAAAAACTACAAGCGGAGCTCGAAAAATATCAGCAGCTACAAAAAGACCTGAGCAAGAGCATGTCGGCGCGACAGAAGCTGGAGGCGCAGCTGACCGAGAACAACATCGTGAAAGAGGAGTTGGGCCTGCTGGAAGCCCAGAACACCGTCTATAAACTGATCGGACCAGTGCTAGTGAAGCAAGATCTGGATGAAGCAAAAGCCACTGTAGGGAAAAGGCTGGAGTACATCACTGGAGAgatCCTGCAGCAGGAGTACCAGCGGGCCCAGGGCCGCGCCCCCGTCAAAGTGTGA

Function

NR:

description
PREDICTED: prefoldin subunit 6-like

GO: NA

KEGG:

id description
K04798 pfdB, PFDN6; prefoldin beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015320 True 312 mRNA 0.54 4 7821194 7825760

Neighbor

gene id symbol gene type direction distance location
AMCG00015314 NA coding downstream 63975 7748342 ~ 7757219 (-)
AMCG00015313 NA coding downstream 110926 7707910 ~ 7710268 (-)
AMCG00015304 NA coding downstream 431634 7386859 ~ 7389560 (-)
AMCG00015303 NA coding downstream 523609 7294862 ~ 7297585 (-)
AMCG00015300 NA coding downstream 589258 7231442 ~ 7231936 (-)
AMCG00015321 mrps12 coding upstream 921 7826681 ~ 7828114 (-)
AMCG00015318 NA coding upstream 7558 7833318 ~ 7834220 (-)
AMCG00015319 NA coding upstream 31319 7857079 ~ 7861747 (-)
AMCG00015329 NA coding upstream 51674 7877434 ~ 7885936 (-)
AMCG00015327 NA coding upstream 62865 7888625 ~ 7897453 (-)
G97134 NA non-coding downstream 1005 7819804 ~ 7820189 (-)
G97130 NA non-coding downstream 5792 7814894 ~ 7815402 (-)
G97121 NA non-coding downstream 40596 7780392 ~ 7780598 (-)
G97041 NA non-coding downstream 201677 7497942 ~ 7619517 (-)
G96994 NA non-coding downstream 456195 7362385 ~ 7364999 (-)
G97221 NA non-coding upstream 143837 7969597 ~ 7970757 (-)
G97244 NA non-coding upstream 175726 8001486 ~ 8016073 (-)
G97395 NA non-coding upstream 243020 8068780 ~ 8069037 (-)
G97409 gng3,LOC107559409 non-coding upstream 298508 8124268 ~ 8126464 (-)
G97475 NA non-coding upstream 606163 8431923 ~ 8433316 (-)
G97125 NA other downstream 34752 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 372900 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 897480 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 924767 6891235 ~ 6896427 (-)
AMCG00015283 NA other downstream 943460 6870462 ~ 6877734 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other upstream 244275 8070035 ~ 8091826 (-)
G97411 NA other upstream 305547 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 397439 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 535854 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 584227 8409987 ~ 8411882 (-)

Expression


Co-expression Network