AMCG00018238 (LOC101065496,LOC101160359,LOC106579193,LOC107556665)


Basic Information

Item Value
gene id AMCG00018238
gene name LOC101065496,LOC101160359,LOC106579193,LOC107556665
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5076119 ~ 5094692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018238
tgTAACTGTAACCTACACGCCCGTCGCTGTCGGTTCAACATGGAGTTGTACAAGCTGTCCGGGAGGAAGAGCGGGGGCGTGTGCATGAACTGTCGGCACAACACGGCCGGCCGGCACTGCCACTACTGCAAGGAGGGGTTCTACCGTGACCTGGGGCGCCCCATCACACACAGGAAAGCCTGCAAAGGCCTGTTGTTGCACAATGACGCGGCCACTTCAAACGCCGTTCAGGGGCCGAATCAGCTGCAGTTCGTTAGCACATCGGCGAGCGTGAAGGGGAAGAGGAATGTCGGGCATTCCCAAATGGGCTCCCCTCGGCACCTGGGCACGAGAATTAGCCGGCAACAACAGGCAAAGCCACATGAGTCGCACGTCGGCAAACCCACAAGAGCGAGCAGCCAGGGCCGTCCTGGTGGGGTGACATTTGACCTGCGCCCCCCCGGTGTGCCCAATTATAGGAGCGTGAGGGACCCTCGACCCGCCCCGCCCCCCTCCCCTGAGGACAccgaaaagaaaacaacaacctcaaAGGCCCACTTTCAAAGCATTTCCCTGGGTCCCGAGGATTCTTTGGGGATTTACCGAGACGGCAGAGTGGGAGCCGCTGGCAAGACCTGCAACCAGACAACGGGTCAGTGCCCGTGCAAGGACGGCGTGACGGGCATCACCTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCCCCCGTGGCCCCCTGCATCAAGATCCCCGTCGTGAACCCCACGGCCGCCATCAGCAGCACAGAGGAGCCAGCAGATTGTGAATCATACTGCAAACCAGTGAAAGGAAACCTGAAGATTAACATGAAGAAGTACTGCAAGAAGGATTATGcggTACAAGTCAACGTCCTGGACATGGAGACAGTGGGGGACTGGGCCAAGTTCTCGGTCAACGTGGTTTCAGTCTACAAGAGCCGGGGGGAGCCCCTAAAGAGGGGGGACCACTTCCTGTGGATCCACATGAAGGACCTGGCCTGCAAGTGCCCCAAGATCCAGATGAGCAAGCGGTATCTGGTGATGGGGACCAGCGAGGGCGGCGCGGAGCGGGCAGGGCTGCTGGCCGACAAGAACAGCCTGGTCATCCAGTGGAGGGACGTTTGGACGCGGAGACTCCGCAAATTCCAGCGCAAGGAGAAGAAGGGCAAGTGCAACAAGGCGTAA

Function

NR:

description
PREDICTED: netrin-3-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018238 True 1185 mRNA 0.60 6 5076119 5094692

Neighbor

gene id symbol gene type direction distance location
AMCG00018237 LOC102777150,LOC102206336,LOC101478571,LOC100698643,LOC101065496 coding upstream 16698 5058378 ~ 5059421 (+)
AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding upstream 52892 5022592 ~ 5023227 (+)
AMCG00018235 NA coding upstream 81951 4972950 ~ 4994168 (+)
AMCG00018233 NA coding upstream 192266 4874927 ~ 4883853 (+)
AMCG00018231 amdhd2,LOC107661858 coding upstream 256525 4816830 ~ 4819594 (+)
AMCG00018236 NA coding downstream 76810 5171502 ~ 5183063 (+)
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding downstream 98525 5193217 ~ 5204864 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding downstream 118443 5213135 ~ 5222485 (+)
AMCG00018244 nme3 coding downstream 132694 5227386 ~ 5233357 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding downstream 176507 5271199 ~ 5278925 (+)
G115061 NA non-coding upstream 261700 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 482274 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 486045 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 689230 4386180 ~ 4386889 (+)
G114888 NA non-coding upstream 774441 4298638 ~ 4301678 (+)
G115099 NA non-coding downstream 456 5095148 ~ 5100938 (+)
G115188 NA non-coding downstream 221761 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 249795 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 951338 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1431027 6525719 ~ 6588409 (+)
G115049 NA other upstream 312214 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 472014 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 882789 4186410 ~ 4193330 (+)
G114551 NA other upstream 2428345 2640846 ~ 2647774 (+)
G114518 NA other upstream 2507181 2491313 ~ 2568938 (+)
G115299 NA other downstream 854771 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1060796 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1615790 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2798935 7893627 ~ 7894449 (+)
G115648 NA other downstream 3025086 8119778 ~ 8122171 (+)

Expression


Co-expression Network