hmx1 (LOC107671606,LOC107712016,LOC107556513,LOC107674270,LOC107552587,LOC107752954)


Basic Information

Item Value
gene id hmx1
gene name LOC107671606,LOC107712016,LOC107556513,LOC107674270,LOC107552587,LOC107752954
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19881125 ~ 19882724 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249777.1
TTTCGTTTAGAAAGTAGGCTATTCGCGAATCGCTGAGACGGGTATATTTGTACGAGAAATGCACGACAAAAGCCAACAACGGCACACTTCCAGCGCATCCAGGGGCTCGTCGTTTTTTATCGAGAATCTACTTGGCTCTTGTAGGACAGAAAAGCCCGCCCGTCCTTCGAAGGATAACCATGGCACGGAGCGGGAGACGGCTCTTAAAGGCGGCACTGAAGCGCATCTCAAGGAAATGTGCAGTCAGGCGTCCAGCGCAGGCTTCAAGACAGGCATTTGTCGGAGCACACGGTCGCCTCTGGATTGGTATGAACGGGATGCCTCAGAGAGTCCCAAAGAAGAAACCCGCCATTCCAGTGAGCACTGCGGCAGCGACAGGACCAGCCCCGTGACCCCCGAGCCTCCCGGCGGAGCGGCGGACCGAAAAGCGAGCGAGCGCGCGGGTGGCGAGGGGGAGGACGCTCCGCAGCTTTTCGACGAGCGCTCGGGACCCGACGCCTCGGAGCAGGGCACGGCCCGGAAGAAAAAGACCCGAActgtgttcagcagaagccAGGTGTTCCAGCTTGAATCCACTTTCGACATGAAGAGATACCTCAGCAGCTCCGAGCGCGCCGGGCTCGCGGCCTCCCTGCACCTGACCGAGACTCAGGTGAAAATCTGGTTCCAGAACCGCAGAAACAAATGGAAAAGACAGCTGGCCGCGGATTTGGAGGCTGTTAATTTTAACCACAGCTCCCAGCGGATTGTGCGGGTGCCCATCTTGTACCACGACAAAGCGACGCCCGTGTCGACCCTCAGTTTTAACGTGTCTCAAGTCTCGCCACCGATCATGGGCTTCTCCAATTCAGTGAACTATCCTTTATCGTCTTTCGCTCATTCGATGAATTTAATGACATCGCAAATGACAGGCCTTGTCTGATCATCTTTAGCTATACCGACAAGCGGTCCAAGGACGGTTAAACCGAACGAGGTGCAATAACTGATGTAGCCTATACACATCCTGCTGGAAACTGCAGTACCGATGTCTCCTTCttccaaagaaaagaaaacacctATTACAAGATCACAAGATAAACGACAAGCTCGTGATGTCACCGTTACCTGTCTATAATAGTCT

Function

NR:

description
PREDICTED: homeobox protein HMX1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043010 camera-type eye development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249777.1 True 1120 mRNA 0.54 2 19881125 19882724

Neighbor

gene id symbol gene type direction distance location
hmx4 hmx4,LOC107712017,LOC107552578,LOC107671594,LOC107674271,LOC107752946,LOC107556514 coding downstream 1474 19878191 ~ 19879651 (-)
clgn clgn,LOC107551136,LOC107671330,LOC107712024,LOC107737082,LOC107674239,LOC107556507 coding downstream 95478 19777091 ~ 19785647 (-)
maml3 maml3,LOC107674228,LOC107737085,LOC107712021,LOC107556508,LOC107671314 coding downstream 123769 19665097 ~ 19757356 (-)
tesk1a si:ch211-113e8.3,LOC107671138,LOC107551064,LOC107712023,LOC107737090,LOC107674262,LOC107559636 coding downstream 256884 19611829 ~ 19624241 (-)
zfp91 LOC107671112,LOC107551018,LOC107748831,LOC107674257,LOC107737094 coding downstream 284123 19589806 ~ 19597002 (-)
adra2c adra2c,LOC107552592,LOC107671617,LOC107712015,LOC107752971,LOC107556512,LOC107674202 coding upstream 28956 19911680 ~ 19916332 (-)
dok7b dok7,LOC107749932,LOC107679881,LOC107674231,LOC107714234 coding upstream 84143 19966867 ~ 19984964 (-)
rgs12b rgs12b,LOC107749922,LOC107556525,LOC107714241,LOC107679871,LOC107674230,LOC107551217 coding upstream 112466 19995190 ~ 20032019 (-)
htt htt,LOC107679870,LOC107551186,LOC107674220 coding upstream 151258 20033982 ~ 20064155 (-)
trnae-cuc_3 NA coding upstream 214231 20096955 ~ 20097026 (-)
G4609 zgc:194443,LOC107559638,LOC107737093,LOC107559639,LOC107674248,LOC107552058,LOC107551053,LOC107551042 non-coding downstream 71494 19598210 ~ 19809631 (-)
G4615 NA non-coding downstream 248872 19631098 ~ 19632253 (-)
G4611 NA non-coding downstream 269610 19608383 ~ 19611515 (-)
G4607 NA non-coding downstream 300264 19579564 ~ 19580861 (-)
G4600 NA non-coding downstream 327979 19552628 ~ 19553146 (-)
G4671 NA non-coding upstream 53666 19936390 ~ 19936759 (-)
G4713 NA non-coding upstream 55295 19938019 ~ 19938401 (-)
LOC122345298 NA non-coding upstream 272940 20155664 ~ 20157523 (-)
G4870 NA non-coding upstream 317271 20199995 ~ 20265069 (-)
LOC122345304 NA non-coding upstream 382561 20265285 ~ 20266183 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 341979 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 2000708 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 2116393 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 2444418 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 3432606 16447088 ~ 16448519 (-)
si:dkey-9i23.16 NA other upstream 254311 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 406593 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 484405 20367129 ~ 20369111 (-)
G4958 NA other upstream 801118 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 1023446 20906170 ~ 21410571 (-)

Expression


Co-expression Network