G105378 (cltcb,cltc,LOC107554261,LOC107659923,LOC107713425,LOC106603518)


Basic Information

Item Value
gene id G105378
gene name cltcb,cltc,LOC107554261,LOC107659923,LOC107713425,LOC106603518
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10302396 ~ 10305221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU155605
CGGAAATTCCAATTAGAAGCAGCCATTTCTGTTTGGCGTCAGTGCGGTagttaataatttgacagcctGCTAAACTGGAATGCCGGTCAAAGACTTTGATGGGCTGTGAGTCTCCTTCCATACTCCAGTGATAGACCGCATTGTCTGTCACGAGTGCTACGGTATTGAGAGAGATCCACTTCCAAAATGTAACGTCCTCGGTCATGGTGTGGGCCTTCATCTTGCTCTTCatttcaatgttgaaaatctGAAGGGTTTTTGCCGCTGCTTTAAGAGCAATGACTTTGCTGGCTGGGTTCATGATGGCACTGTCTGCGGAGATGGGCCTGCGGATGGGCGTGTTTGGATCGCTCATGTCGATGATCACCACCTGGGCCTGTTCGCCCACCTTCTCCCGGATGCAGATGAACTTATCCGACTCCATCGTGAGGGTGCTAAACCCAATGTTCGCTGGGTTTATGCCCAGGTTCTGG

Function

symbol description
cltcb Predicted to enable clathrin light chain binding activity and structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle. Predicted to be part of clathrin coat of coated pit; clathrin coat of trans-Golgi network vesicle; and clathrin complex. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 56. Orthologous to human CLTC (clathrin heavy chain).
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

NR:

description
PREDICTED: clathrin heavy chain 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155605 True 473 lncRNA 0.50 2 10302396 10305221

Neighbor

gene id symbol gene type direction distance location
LOC122358610 NA coding downstream 20948 10279272 ~ 10281448 (-)
LOC122358609 NA coding downstream 26428 10272889 ~ 10275968 (-)
LOC122358608 NA coding downstream 30313 10270001 ~ 10272083 (-)
LOC122358607 pim3 coding downstream 35716 10264468 ~ 10266680 (-)
LOC122358606 pim3 coding downstream 41229 10259235 ~ 10261167 (-)
tubd1 tubd1,LOC107728776,LOC107659941,LOC107579697,LOC107581164 coding upstream 33313 10338534 ~ 10342890 (-)
LOC122358984 LOC107713431,LOC107701403,LOC107728777,LOC107597591,LOC100002059,LOC107582660,LOC107659940 coding upstream 115033 10420254 ~ 10429603 (-)
phldb1b phldb1,LOC107701414,LOC107659918,LOC107717178 coding upstream 276982 10582203 ~ 10637949 (-)
arcn1b arcn1b,LOC107713460,LOC107701413,LOC107582579,LOC107597516,LOC107659917,LOC107717188 coding upstream 346977 10652198 ~ 10657750 (-)
pih1d2 pih1d2,LOC107701408,LOC107577555,LOC107699912,LOC107597596 coding upstream 367394 10672615 ~ 10674737 (-)
G105368 NA non-coding downstream 12547 10289476 ~ 10289849 (-)
LOC122358536 NA non-coding downstream 17924 10284022 ~ 10284472 (-)
LOC122358386 NA non-coding downstream 32428 10269204 ~ 10269968 (-)
G105362 NA non-coding downstream 50401 10245464 ~ 10251995 (-)
G105363 NA non-coding downstream 52271 10249808 ~ 10250125 (-)
G105375 NA non-coding upstream 16267 10321488 ~ 10325416 (-)
G105389 NA non-coding upstream 21863 10327084 ~ 10327564 (-)
G105396 NA non-coding upstream 31549 10336770 ~ 10337285 (-)
G105434 NA non-coding upstream 82371 10387592 ~ 10387839 (-)
G105435 NA non-coding upstream 83278 10388499 ~ 10388761 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 505473 9763871 ~ 9796923 (-)
G105059 NA other downstream 746609 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 865599 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 1256281 9038896 ~ 9046115 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 1639532 8657688 ~ 8662864 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 207410 10512631 ~ 10514062 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 353713 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 768060 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 997009 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 1021291 11326512 ~ 11342116 (-)

Expression


Co-expression Network