pih1d2 (pih1d2,LOC107701408,LOC107577555,LOC107699912,LOC107597596)


Basic Information

Item Value
gene id pih1d2
gene name pih1d2,LOC107701408,LOC107577555,LOC107699912,LOC107597596
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10672615 ~ 10674737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259277.1
CGGTTAATTTTGAGCATGGATATCGCTGGCTATGACAATAAGGCAGCTCTGCAGCAGGTGAATCAGTTTTGGTCGATGTTAGACGACATGTCTCAGAATAATCCCGAGGAGTACAGGACCTTCATTGAACGCCAGTTACGGGAAGGAGCGGAGTTTCACTCACCGCCTCAGCCGCACGCCTGCCTCCGCACTGCTCTGCTGGAACCAAAGGACGGAATATTGTACATTAACGTGTGTGGCTGGAAACGTGTACCAGCGCCCACTTCTTACAGTGACCCTGTTCCTGTTTGTGGAGGACGATTGGAGACAGTGACTGAGGAGAAAGgtCAATACAGTGTCATTGATGTGGCCTTCAACCCTGAGGTTCTGCAGACTGCAGAGAAAGACAAAAACGAGAAAGAGAAGCTTCACCTACTTGCTCTGAACTTCATCCGGCAGCAGCACAATCTGAAACTGTCCCAGCACTACAAACTCACCAAAGACAAACTCAAAGGCAGAATTCAGGATTTGAAGCAGCGTCTTATGTCGCCGCAAACGTGCAAATCTTCTGCCAAAACCCCACAATCTGAACCAGCCCCATCGCTCCTGCAGCAGATCTCCTCACTGCGCCTGGCTGAGAGTAATGAGGACTCAAACATCCAACTGAGCGTAGAGCAGGAGAATAAACCAGCCCGATCCGGTCTCATTGAGGTGATCTCCAGCACAGAATCAGACCAGCCACAGCCACAACAACCCAAGCATCATCTCACAGTCTGTCCCGATGGCAGCAGCTCATCCAGGAGCATGCAGCTAAGTGTCGAGCTTCCTGGGGTGAGATCTGTGTCACAGTGCCAGCTCAGCATCTCTCAGggtGATATTCTGCTGGAAGTAGAAGACCTTTATTATCTTCATCTACAGTTTCCTGAGCTGGTCAAGGAGGAGACTTGCACTGCAACgtttaataagaagaaacaaactctaaatGTTACAGTGGCTGTGTTATGAGAACACGTATTCGTCCAGAAACTGAGAATGTAAACACTATAGTTGTATTACTGACTGTTGTCTCCAGGATCGTTAGTTATTTCAATAATTATGTGCATCGTTTTTGGTCACAACAGATATTTTATTCGCAGAGAACCATCTGTTCCTAAAATTTTAAGTCCATTatagaaaataacaaaatagaTTCTGTTATAAGCCaacaattatttcattttattgctgtcaaaataaaatgattgctaATTTTAATAGATAATTGatgttaaaactgtttattattttgtttagatAAGTACAAAATAGAATACTAGAAACTAAAACctcattttaaagtgaatttagtAGAGTATGAAAAATGGATATTATTTTtggatttgctgaaaatgttagtatggaaaatgagaataaactaaatcagaaataaataaataatcatacaaaCCCA

Function

symbol description
pih1d2 Acts upstream of or within axonemal dynein complex assembly. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic placode; and pronephric duct. Orthologous to human PIH1D2 (PIH1 domain containing 2).

NR:

description
PIH1 domain-containing protein 2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259277.1 True 1429 mRNA 0.42 5 10672615 10674737

Neighbor

gene id symbol gene type direction distance location
arcn1b arcn1b,LOC107713460,LOC107701413,LOC107582579,LOC107597516,LOC107659917,LOC107717188 coding downstream 14865 10652198 ~ 10657750 (-)
phldb1b phldb1,LOC107701414,LOC107659918,LOC107717178 coding downstream 34666 10582203 ~ 10637949 (-)
LOC122358984 LOC107713431,LOC107701403,LOC107728777,LOC107597591,LOC100002059,LOC107582660,LOC107659940 coding downstream 243012 10420254 ~ 10429603 (-)
tubd1 tubd1,LOC107728776,LOC107659941,LOC107579697,LOC107581164 coding downstream 329725 10338534 ~ 10342890 (-)
LOC122358610 NA coding downstream 391167 10279272 ~ 10281448 (-)
tmprss5 tmprss5,LOC107713421,LOC107717179,LOC107597570 coding upstream 643 10675380 ~ 10681244 (-)
LOC122359100 NA coding upstream 8706 10683443 ~ 10689262 (-)
LOC122359098 NA coding upstream 15242 10689979 ~ 10695000 (-)
btr16 NA coding upstream 20183 10694920 ~ 10699086 (-)
LOC122359114 NA coding upstream 24992 10699729 ~ 10704448 (-)
G105497 NA non-coding downstream 160352 10475572 ~ 10512263 (-)
G105462 NA non-coding downstream 203178 10466964 ~ 10469437 (-)
G105461 NA non-coding downstream 210546 10461741 ~ 10462069 (-)
G105440 NA non-coding downstream 265330 10406951 ~ 10407285 (-)
G105439 NA non-coding downstream 278283 10394095 ~ 10394332 (-)
G105653 NA non-coding upstream 294432 10969169 ~ 11028778 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding upstream 494384 11169121 ~ 11171739 (-)
G105694 NA non-coding upstream 630246 11304983 ~ 11306514 (-)
LOC122359088 NA non-coding upstream 650538 11325275 ~ 11325997 (-)
LOC122358449 NA non-coding upstream 747117 11421854 ~ 11425407 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other downstream 9027 10658934 ~ 10663588 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 158553 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 875692 9763871 ~ 9796923 (-)
G105059 NA other downstream 1116828 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 1235818 9434426 ~ 9436797 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 398544 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 627493 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 651775 11326512 ~ 11342116 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other upstream 678909 11353646 ~ 11357553 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other upstream 1168029 11842766 ~ 11855895 (-)

Expression


Co-expression Network