tmprss5 (tmprss5,LOC107713421,LOC107717179,LOC107597570)


Basic Information

Item Value
gene id tmprss5
gene name tmprss5,LOC107713421,LOC107717179,LOC107597570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10675380 ~ 10681244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259269.1
GCAGCATCTCTGCTGTGATGGAGGTGAGTGGATGAGAGAAAGAGTCCCGGTAGCTGACGCCAGGAAACCCCTGGATCTAAACAACAACCAAAACATGAGTCTCAGTAGAGATGCAGTGGCAGTGATTGAGAATCCTGTGGTGGTCAGACAGTCTTTTCATCCAGAGCATCTGCAGTTGGACAGGATTGAGACGGGCCAGAATAATCCCACCTGGATCAGAGAGCTACAATTTCTCCATCCAGTGTCTGGCAAAGTGTCGGCCCATAAACTGGTGAGAGTGTTTGCAGCTCTGTGTGTTCTCTGTCTGCTGGGAGGCGTTGTCATTGGAGTTTGGTTTATAGTGAAAATTCTTTTAAGGCCAAACTCAGCTCAGAGCCCTGCGAGCCTAGGAGACACTAAAGACACGTCCTTCTGCAATGTAACCGAGGACATCTCTGTGacagaccccagaaaagTGTTTTACAGGATCAGTGCCGAGAACTCTCTTCTGGAGATCCAGCTGGAGAAGCTCCAGACGTGGCTGCCCGTATGTTACGAGCGGTGGAACTCTTCTCTGGGAACGCTTGTATGTCGACAGCTGGGCTATCTGAGATTATCAAAGCACAAAGGGGTGAATCTGACTGATATTGGGCCAAACTACACGGATGGATTTGTCCAAATTGCATCAGAACACCAAAACAATTTGGAGAGTTTATGGCGTTTCAGgGGTAGCTGCAGTACAGGAAAGGTTATAGCGCTGAAATGTTTTGAGTGCGGGACCAGAGCAAAGTTACCTAGGATTGTCGGAGGAGTGGAAGCTACTCTTGGCAGATGGCCCTGGCAAGTGAGTCTTTATTACAGTAACCGCCACATCTGTGGAGGATCCATCATCACCAACCAATGGATAGTTACAGCTGCTCACTGTGTCCACAACTACAGGCTACCTCAAGTGTCCAGTTGGGTGGTTTATGCTGGTATTGTAACCAGCAATTCGGCTAAACTGGCTCAATACCAAGGCTTAGCTGTGGAGAGGATCATCTACAACAAGAATTACAACCACAGGACTCATGACAATGATATCGCTTTGGTGAAATTAAGAGCTCCTTTGAATTTCTCAGacaccATCAGACCTGTGTGTCTACCTCAGTTTGATTATGATCTACCAGGAGGAACCCAGTGCTGGATCTCTGGTTGGGGATATACACAGCCAGATGATGTTCATATACCAGAGGTTCTCAAAGAAGCACCAGTTCCTTTAATAAGCACAAAGAAATGCAATAGTTCTTGCATGTACAACGGAGAGATCACCCCTCGAATGCTCTGTGCAGGCTATACAGAAGGAAAAGTAGATGCATGTCAGGGGGACAGTGGAGGTCCTCTGGTTTGCCAGGATGAGAATGTCTGGAGGCTGGTCGGTGTTGTTAGCTGGGGAACAGGCTGTGCTGAGCCAAACCATCCAGGAGTTTATACTAAAGTGGCTGAGTTTTTAGAGTGGATATATGAGATTATAGAGAGCTACTAAAGACTGATGTTTGAAAgtagaagagaagaaaagaataTCCTgaccatttttaaattgtgtacttttttatttattatattttattatataaagccTCAACATTTACACAGCAAGGTATgattacattt

Function

symbol description
tmprss5 Predicted to enable scavenger receptor activity; serine-type endopeptidase activity; and serine-type exopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS5 (transmembrane serine protease 5).

NR:

description
PREDICTED: transmembrane protease serine 5

GO: NA

KEGG:

id description
K09636 TMPRSS5; transmembrane protease serine 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259269.1 True 1629 mRNA 0.46 13 10675380 10681244

Neighbor

gene id symbol gene type direction distance location
pih1d2 pih1d2,LOC107701408,LOC107577555,LOC107699912,LOC107597596 coding downstream 643 10672615 ~ 10674737 (-)
arcn1b arcn1b,LOC107713460,LOC107701413,LOC107582579,LOC107597516,LOC107659917,LOC107717188 coding downstream 17630 10652198 ~ 10657750 (-)
phldb1b phldb1,LOC107701414,LOC107659918,LOC107717178 coding downstream 37431 10582203 ~ 10637949 (-)
LOC122358984 LOC107713431,LOC107701403,LOC107728777,LOC107597591,LOC100002059,LOC107582660,LOC107659940 coding downstream 245777 10420254 ~ 10429603 (-)
tubd1 tubd1,LOC107728776,LOC107659941,LOC107579697,LOC107581164 coding downstream 332490 10338534 ~ 10342890 (-)
LOC122359100 NA coding upstream 2199 10683443 ~ 10689262 (-)
LOC122359098 NA coding upstream 8735 10689979 ~ 10695000 (-)
btr16 NA coding upstream 13676 10694920 ~ 10699086 (-)
LOC122359114 NA coding upstream 18485 10699729 ~ 10704448 (-)
LOC122359108 LOC107713428,LOC107582658,LOC107701407,LOC107597597,LOC107713453,LOC107701410,LOC107708768 coding upstream 25832 10707076 ~ 10708056 (-)
G105497 NA non-coding downstream 163117 10475572 ~ 10512263 (-)
G105462 NA non-coding downstream 205943 10466964 ~ 10469437 (-)
G105461 NA non-coding downstream 213311 10461741 ~ 10462069 (-)
G105440 NA non-coding downstream 268095 10406951 ~ 10407285 (-)
G105439 NA non-coding downstream 281048 10394095 ~ 10394332 (-)
G105653 NA non-coding upstream 287925 10969169 ~ 11028778 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding upstream 487877 11169121 ~ 11171739 (-)
G105694 NA non-coding upstream 623739 11304983 ~ 11306514 (-)
LOC122359088 NA non-coding upstream 644031 11325275 ~ 11325997 (-)
LOC122358449 NA non-coding upstream 740610 11421854 ~ 11425407 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other downstream 11792 10658934 ~ 10663588 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 161318 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 878457 9763871 ~ 9796923 (-)
G105059 NA other downstream 1119593 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 1238583 9434426 ~ 9436797 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 392037 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 620986 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 645268 11326512 ~ 11342116 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other upstream 672402 11353646 ~ 11357553 (-)
auts2b LOC107726097,LOC107586267,LOC107662780,LOC107657550 other upstream 1161522 11842766 ~ 11855895 (-)

Expression


Co-expression Network