arcn1b (arcn1b,LOC107713460,LOC107701413,LOC107582579,LOC107597516,LOC107659917,LOC107717188)


Basic Information

Item Value
gene id arcn1b
gene name arcn1b,LOC107713460,LOC107701413,LOC107582579,LOC107597516,LOC107659917,LOC107717188
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10652198 ~ 10657750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259268.1
GGCGCAACTTTTTCCGGTTGGACTCTGGAGACGTGGCTCTGTTTCTTCAATATTGCGAGCCAAGCTATATGCTACTGTTAAAAACATAGCCTAGGTCACCGCTCTGACATCTCGTGTTGTAGAAAGAGCTGGACAGACAGTGCCTGTGACTGATTCCGCTGACGGATCCTCGTCTGAAAGGAAACAGATATGGTGCTCTTGGCAGCGGCGGTGTGCACTAAGGCAGGAAAAGCCATAGTGTCACGACAGTTTGTGGAGATGACTCGAACCCGTGTCGAGGGCCTTCTGGCTGCCTTTCCCAAACTAATGAATACAGGCAAGCAGCACACTTTTGTGGAGACAGAGAGCGTCCGTTACGTCTACCAGCCTTTGGAGAAACTCTACATGGTTCTGATCACtacaaaaaacagcaacattCTGGAGGACTTGGAGACACTAAGACTTTTCTCCAGAGTGatcCCTGAATATTGCAGAGTGTTGGAGGAAAGTGAGATCTCAGAGCACTGTTTTGATCTCATTTTTGCGTTTGATGAGATTGTAGCTCTTGGCTACAGAGAGAACGTTAACCTGGCCCAGATTCGCACTTTCACTGAGATGGACTCGCATGAAGAGAAAGTATTCAGGGCTGTCAGAGAGACTCAAGAAAGAGAAGCAAAGGCTGAGATGAAACGCAAGGCTAAAGAGCTGCAGCGAGCAAGACAGGATGCTGAACGCGCCGGAAAGAAATCGCCAGGCTTCGGGGGTTTTGGAAGTTCAGGAATGGGCAGCATCACATCAGCCACCATCATTACTGATACAATAGAGCCAGAGAAACCCAAAGTGGCTCCTGCTCCAGTCAGGCCGAGTGGGTCCAGTAAAGCCCTGAAGCTGGGCGTTAAAGGAAAAGAGGTGGATAACTTTGTGGACAAACTAAAGTCAGAAGGAGAAAACATCGTCACATCCGGTGCGGGAAGGAAGGCATCGGAGGCATCTAAAGTCCTTCAGCCTCCAGTGAATATGGAGAGTGTTCATCTGAGGGTGGAGGAGAAGATCTCTCTGACCTGTGGTCGGGATGGTGGGCTGCAAAACATGGAGGTTCTGGGCATGATCACTCTAAAAGTTACAGATGAAAAAAATGGACGCATTTCCATACTCATCaacaacaatgacaaaaaagGAGCTCAgctacagactcaccctcatgttgatAAAAAGCTGTTCACCAATGAGTCCCTGATCGGTCTGAAAAACCAGGACAAGTCCTTCCCTCTAAACAGTGATTTGGGGGTACTGAAATGGAGGTTACAGAGCACAGATGAGTCCCTCATTCCTTTAACCATTAACTGTTGGCCATCAGAAAGTGGAAACGGCTGTGACGTCAACATCGAGTATGAGCTTCAGGACGAGGGGCTTGAACTCAATGACGTTGTCATTACTATCCCTCTGCCGTCAGGAGTCGGTGCTCCCGTAGTCGGTGATCTGGACGGGCAGTATAACCATGACAGCAGGAAAAACATCCTCGAATGGTCACTTCCTGTCATTGATGAGAAAAACAAGAGTGGCAGCCTGGAGTTCAGTATAGATGGCAAACCTAACGATTTCTTCCCagttaatgtttcttttgtcTCCAAAAGAAACTTTTGTGACATTCAGGTGGCCAAGGTGACATACATAGAAGGAGGCAGTCCAGTCAAATTCTCCTCAGAGACGTCGTTCGTTGTGGAGAAGTACGAGATCCTGTAAATGTTTCCTGGTGGAAGATCGTTTCAACCTGCCAGCCAGCTTAACGGATCAGAGAGCGCTGTACGTCAACAGAGCCCTCAAAACATTCTCTGACGCGGGCTGCAGTActtctgtgtttctgtttgtctTAAAGGAAAATAATCTACCTTTATATAAACTGGACCTTCAGCTGTTCAAGTACTAAGTGCGGTCAGCTACACCTGCCAGAAAAGACAAATgagagtaaaaaataaagcactgcACCATCGAGAGAAGATCAGTGTCGTCCTACAAGCCTGTATGAACCCTGACCCTTCAAAGAGATAGATTCAGATTGAAAACGTAATAATTGTTGCATGGATTTTGTACCGAGTTGCAACCTAATTGaccttttttttcaaaccacGTGATCCGCATCGGCTCATTGGCGATTTGGGTTTTATTTCTAATCATCGACGAATAAATGCTGGTTTCTAACATGAAAACAGACCTAATATTATAGTACCAAATGAATGTGTGGGTGATGAATAAATCAGCTGTGCTTGTGCAATAAGAACTGACGCCGCATTAAATGTGCAGTCCTAATTGTGACTCatcatttttcatctttaatacGACACCTCTGCCGTTTAGGTGTTAGCGAATATGAATATCACTGTCtacatgaaaaaagaaaagaaaaaaaaaatgctatttgccTTTTAGTTTCCCCCTTTCTTTTGGTGCAGTTCTATTTATGTAatcatttgtttgcataataatcTAAACAGGAAGGTTTTTCATTCTCTGTTGTTTTGTAAGTAATGTTACACATAATctgtttaaatgttcttttctttttattcatcgCTACATTTATTTGGCTAAACAGGAAAATATATTCTCTCTGGCTTCCCAGATGTTATTAAGaatggatttttctttttgtttccatgttcaaaaatacatttagcagCGCACACTCAAAGATGATAAAGGAACGCCGAGGGGAGGGTTACGACATTCCATTCTGCTGTAAGATACTTATGAATACCTTTAATCAATAATAAAGtcagatttaattaaaa

Function

symbol description
arcn1b Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Predicted to be active in cytosol. Is expressed in several structures, including axis; notochord; otic vesicle; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human ARCN1 (archain 1).

NR:

description
PREDICTED: coatomer subunit delta

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259268.1 True 2768 mRNA 0.44 10 10652198 10657750

Neighbor

gene id symbol gene type direction distance location
phldb1b phldb1,LOC107701414,LOC107659918,LOC107717178 coding downstream 14249 10582203 ~ 10637949 (-)
LOC122358984 LOC107713431,LOC107701403,LOC107728777,LOC107597591,LOC100002059,LOC107582660,LOC107659940 coding downstream 222595 10420254 ~ 10429603 (-)
tubd1 tubd1,LOC107728776,LOC107659941,LOC107579697,LOC107581164 coding downstream 309308 10338534 ~ 10342890 (-)
LOC122358610 NA coding downstream 370750 10279272 ~ 10281448 (-)
LOC122358609 NA coding downstream 376230 10272889 ~ 10275968 (-)
pih1d2 pih1d2,LOC107701408,LOC107577555,LOC107699912,LOC107597596 coding upstream 14865 10672615 ~ 10674737 (-)
tmprss5 tmprss5,LOC107713421,LOC107717179,LOC107597570 coding upstream 17630 10675380 ~ 10681244 (-)
LOC122359100 NA coding upstream 25693 10683443 ~ 10689262 (-)
LOC122359098 NA coding upstream 32229 10689979 ~ 10695000 (-)
btr16 NA coding upstream 37170 10694920 ~ 10699086 (-)
G105497 NA non-coding downstream 139935 10475572 ~ 10512263 (-)
G105462 NA non-coding downstream 182761 10466964 ~ 10469437 (-)
G105461 NA non-coding downstream 190129 10461741 ~ 10462069 (-)
G105440 NA non-coding downstream 244913 10406951 ~ 10407285 (-)
G105439 NA non-coding downstream 257866 10394095 ~ 10394332 (-)
G105653 NA non-coding upstream 311419 10969169 ~ 11028778 (-)
G105674 pou2af1,LOC107582583,LOC107713464,LOC107717181 non-coding upstream 511371 11169121 ~ 11171739 (-)
G105694 NA non-coding upstream 647233 11304983 ~ 11306514 (-)
LOC122359088 NA non-coding upstream 667525 11325275 ~ 11325997 (-)
LOC122358449 NA non-coding upstream 764104 11421854 ~ 11425407 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other downstream 138136 10512631 ~ 10514062 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 855275 9763871 ~ 9796923 (-)
G105059 NA other downstream 1096411 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 1215401 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 1606083 9038896 ~ 9046115 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 1184 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 415531 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 644480 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 668762 11326512 ~ 11342116 (-)
LOC122358627 vps26b,v26bl,LOC107699898,LOC107748589,LOC107582573,LOC107713444,LOC107597524 other upstream 695896 11353646 ~ 11357553 (-)

Expression


Co-expression Network