RNA id: XM_043259268.1


Basic Information

Item Value
RNA id XM_043259268.1
length 2768
RNA type mRNA
GC content 0.44
exon number 10
gene id arcn1b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10652198 ~ 10657750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGCAACTTTTTCCGGTTGGACTCTGGAGACGTGGCTCTGTTTCTTCAATATTGCGAGCCAAGCTATATGCTACTGTTAAAAACATAGCCTAGGTCACCGCTCTGACATCTCGTGTTGTAGAAAGAGCTGGACAGACAGTGCCTGTGACTGATTCCGCTGACGGATCCTCGTCTGAAAGGAAACAGATATGGTGCTCTTGGCAGCGGCGGTGTGCACTAAGGCAGGAAAAGCCATAGTGTCACGACAGTTTGTGGAGATGACTCGAACCCGTGTCGAGGGCCTTCTGGCTGCCTTTCCCAAACTAATGAATACAGGCAAGCAGCACACTTTTGTGGAGACAGAGAGCGTCCGTTACGTCTACCAGCCTTTGGAGAAACTCTACATGGTTCTGATCACtacaaaaaacagcaacattCTGGAGGACTTGGAGACACTAAGACTTTTCTCCAGAGTGatcCCTGAATATTGCAGAGTGTTGGAGGAAAGTGAGATCTCAGAGCACTGTTTTGATCTCATTTTTGCGTTTGATGAGATTGTAGCTCTTGGCTACAGAGAGAACGTTAACCTGGCCCAGATTCGCACTTTCACTGAGATGGACTCGCATGAAGAGAAAGTATTCAGGGCTGTCAGAGAGACTCAAGAAAGAGAAGCAAAGGCTGAGATGAAACGCAAGGCTAAAGAGCTGCAGCGAGCAAGACAGGATGCTGAACGCGCCGGAAAGAAATCGCCAGGCTTCGGGGGTTTTGGAAGTTCAGGAATGGGCAGCATCACATCAGCCACCATCATTACTGATACAATAGAGCCAGAGAAACCCAAAGTGGCTCCTGCTCCAGTCAGGCCGAGTGGGTCCAGTAAAGCCCTGAAGCTGGGCGTTAAAGGAAAAGAGGTGGATAACTTTGTGGACAAACTAAAGTCAGAAGGAGAAAACATCGTCACATCCGGTGCGGGAAGGAAGGCATCGGAGGCATCTAAAGTCCTTCAGCCTCCAGTGAATATGGAGAGTGTTCATCTGAGGGTGGAGGAGAAGATCTCTCTGACCTGTGGTCGGGATGGTGGGCTGCAAAACATGGAGGTTCTGGGCATGATCACTCTAAAAGTTACAGATGAAAAAAATGGACGCATTTCCATACTCATCaacaacaatgacaaaaaagGAGCTCAgctacagactcaccctcatgttgatAAAAAGCTGTTCACCAATGAGTCCCTGATCGGTCTGAAAAACCAGGACAAGTCCTTCCCTCTAAACAGTGATTTGGGGGTACTGAAATGGAGGTTACAGAGCACAGATGAGTCCCTCATTCCTTTAACCATTAACTGTTGGCCATCAGAAAGTGGAAACGGCTGTGACGTCAACATCGAGTATGAGCTTCAGGACGAGGGGCTTGAACTCAATGACGTTGTCATTACTATCCCTCTGCCGTCAGGAGTCGGTGCTCCCGTAGTCGGTGATCTGGACGGGCAGTATAACCATGACAGCAGGAAAAACATCCTCGAATGGTCACTTCCTGTCATTGATGAGAAAAACAAGAGTGGCAGCCTGGAGTTCAGTATAGATGGCAAACCTAACGATTTCTTCCCagttaatgtttcttttgtcTCCAAAAGAAACTTTTGTGACATTCAGGTGGCCAAGGTGACATACATAGAAGGAGGCAGTCCAGTCAAATTCTCCTCAGAGACGTCGTTCGTTGTGGAGAAGTACGAGATCCTGTAAATGTTTCCTGGTGGAAGATCGTTTCAACCTGCCAGCCAGCTTAACGGATCAGAGAGCGCTGTACGTCAACAGAGCCCTCAAAACATTCTCTGACGCGGGCTGCAGTActtctgtgtttctgtttgtctTAAAGGAAAATAATCTACCTTTATATAAACTGGACCTTCAGCTGTTCAAGTACTAAGTGCGGTCAGCTACACCTGCCAGAAAAGACAAATgagagtaaaaaataaagcactgcACCATCGAGAGAAGATCAGTGTCGTCCTACAAGCCTGTATGAACCCTGACCCTTCAAAGAGATAGATTCAGATTGAAAACGTAATAATTGTTGCATGGATTTTGTACCGAGTTGCAACCTAATTGaccttttttttcaaaccacGTGATCCGCATCGGCTCATTGGCGATTTGGGTTTTATTTCTAATCATCGACGAATAAATGCTGGTTTCTAACATGAAAACAGACCTAATATTATAGTACCAAATGAATGTGTGGGTGATGAATAAATCAGCTGTGCTTGTGCAATAAGAACTGACGCCGCATTAAATGTGCAGTCCTAATTGTGACTCatcatttttcatctttaatacGACACCTCTGCCGTTTAGGTGTTAGCGAATATGAATATCACTGTCtacatgaaaaaagaaaagaaaaaaaaaatgctatttgccTTTTAGTTTCCCCCTTTCTTTTGGTGCAGTTCTATTTATGTAatcatttgtttgcataataatcTAAACAGGAAGGTTTTTCATTCTCTGTTGTTTTGTAAGTAATGTTACACATAATctgtttaaatgttcttttctttttattcatcgCTACATTTATTTGGCTAAACAGGAAAATATATTCTCTCTGGCTTCCCAGATGTTATTAAGaatggatttttctttttgtttccatgttcaaaaatacatttagcagCGCACACTCAAAGATGATAAAGGAACGCCGAGGGGAGGGTTACGACATTCCATTCTGCTGTAAGATACTTATGAATACCTTTAATCAATAATAAAGtcagatttaattaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 139935 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 139971 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 182761 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 190129 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 244913 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 311419 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 415531 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 415531 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 511371 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 647233 11304983 ~ 11306514 (-) True G105694
XM_043259252.1 mRNA downstream 14249 10582203 ~ 10637949 (-) True phldb1b
XM_043259253.1 mRNA downstream 22567 10582203 ~ 10629631 (-) False phldb1b
XM_043258494.1 mRNA downstream 138311 10512631 ~ 10513887 (-) True atf5b
XM_043259008.1 mRNA downstream 222595 10420254 ~ 10429603 (-) True LOC122358984
XM_043258197.1 mRNA downstream 309308 10338534 ~ 10342890 (-) True tubd1
XM_043259289.1 mRNA upstream 1184 10658934 ~ 10663588 (-) True cryaba
XM_043259277.1 mRNA upstream 14865 10672615 ~ 10674737 (-) True pih1d2
XM_043259269.1 mRNA upstream 17630 10675380 ~ 10681244 (-) True tmprss5
XM_043259265.1 mRNA upstream 25693 10683443 ~ 10689262 (-) True LOC122359100
XM_043259263.1 mRNA upstream 32229 10689979 ~ 10695000 (-) False LOC122359098
TU155809 other downstream 138136 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 448785 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 855308 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 855308 9793748 ~ 9796890 (-) False dynll2a
TU155158 other downstream 1096411 9552634 ~ 9555787 (-) True G105059
TU155899 other upstream 1187 10658937 ~ 10661150 (-) False cryaba
TU156055 other upstream 428069 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 645671 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 672152 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 696091 11353841 ~ 11357548 (-) False LOC122358627

Expression Profile