RNA id: TU156065


Basic Information

Item Value
RNA id TU156065
length 3067
lncRNA type read_through
GC content 0.39
exon number 2
gene id igsf9ba
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11073281 ~ 11506177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatagaaaagtgAAATAGTCCTTAATCTAATcagttgggaaaaaaaaaaaaaaaaaaaagattacttcTTGGTTACTTTCTACCTGCAAAAGTGGACCTCCAAAATAGCttgactctttaaaaaaaaataataactgtattGTAATCTTTACTATTTGCCATCCATCACAGCTCATCTGATGACATAGCAAAGTTTGTGTTATTTGAATTAATGATGACTTTAGTAGCCTATTTCCGAAAGATGTTAACTGTCTCTAGAGTTCACTAACAGCTGCTGATCTGCTACCTAAAGTGAAAGCTACTCGGGCGTGTGCTAGTTTAGTTTAACCGATGGTGAATGTATGATTTGCTCTTAGAATTCAGAtttatctgaatatttttagtGTGATGTTTCTCTCTTTTAGCTTATTTATACGTACGCCGATGCGATCAACTCCAAAATGAATCTTGAAGGTACAACTTAATAGGAAATTGAATGAAATCTCATGCAGTACTTGAATAAGGCAGAATATACAAGCAGGAAACCCTGGGGTGCGTAGGGATTCGTACTGTAGTAGCCATTTTGAGTTTCGAGGATTTGATTTAAGTGCCCAAAGGGCTGTTTACTTtgtctttcctttctctctttttgtatACAACTGTTTTACTCGAAGTGAAAACGAATGCTCAAACGTCTCGCAGTGTATTTGAGCTATTCAGTATTAGATCAGCAGACTCCATTGCTTATTTCTATGTACATCTTTTTCCACCCCATGTGGTGCGATTCGTAAGGCTGCTTTAATCGTGTAGTCTCTGAGAGGAGAAGggcagtgtttatttttagatattccTGATTACCTGCCTTTAGCTGTCGGGAGAGAAGTGTTCGACTTAGACTTAACTCTGTTTTTGCTACGTGTTTTGTCAAGTTCTGTCAAGAACTCATTGCTAACAAGTCCTACAACAACCACATAATGTTTACATGATCTAGAAATATAACGTGCAAGGATGTAGGCACACTGTACACATTATGACTTGGTGCTATGTCTTTTTGAACTCGTGGTGCTGTGGTTCAGAGGTTAACACACAAACTCACGCACAGTCCTCTGTCTTAAACTAGCCTAACTAAACTAGCTCTGTTGTGATTTCCGTTGTCGAGTTCTCCTGGTGAGTAGGACCGCAAGCAATAAAACCTCTCTCACAGGGCAGGTCCTGTGCGCTCACTATATCTCTCTTTCGGTATGAAAACGGTTAAATACAGTTCGGCTTTGCCTATTCAGTATGTGCTTACGTTATCGCGTGAACGTTCGCCGATAAAAGCCCGCGCATTTAGGCAGATCGCCAGGCTTGAAGGAGGCACTATTTCAATGTATAATCCATAAAATGTACCCACGTTATGATAgtcaatttttttcatttagcatgGGAAGGACGTGGTAACTCGAGCAGGTGGCGTTCTGACGCGTCAAGCGGCGGCGTTTCTGTTTTATAGCGTTTTTCTTGGACACAACGGAGCGATGCGTCCTCGCGTAAAGCTGTCACACCGATTTAAGACGCAGGTGCGGTGTCTCTGTATGTCTGTGGAAGGTGATCGACGGCATTTTCTTCAGCTCCTCTGGTCTTTGAAGAGAGAACCCGGTTGAAACGACTCTCTTGAATATATATGATACTGTACAGGTAGATGCGCGCCCCATTTTCGCTTCTGTAAGAGGGCTCGTTTGCAGGAAGCGTCATATCAATTCTTTGATTGCCTGTATTCAGTTTTGTGCTTACTACTTTTGGTGCTTCGTGAaactttgttttccttttttttctgaacagaACTAACCTTGCATAATCAAGCTATTCCACTCGTTCGGACCTGTCTCGTTTCATCTTTTTGTTCTCGATTCTTTTGCTGTTCATATTAACCAGCACTGAAAACTTAGAATGTAATACTGCATTATGCACTAATTTACGactgttttaacattaaaccTCATTCTTAGAGCTTATTGGAAGCATATTTCAAATCGCATTGTGCTTTCTGACTGCTTTTGAATTTGTGTTGTACATTgtttacagattttattattatctaaaGATGTGTTCTGGGCAAAcatgtttttcatctttatCACCCTACATGCAAATGTATAAGAGACTGTTCTTACGTGAAGAAAAAGACCATAATGGAATatgagttttgtttttcctttcaggttttttgttttttgattgaaTGACTAGACCGAAGGCTTCTTTTGTTAATTAATCTCATTTATTTCAGGTATTATTCTCAAACAGTATGGTGCTGTACCAAAGCCTTatgtacaatattattatatgatgCGTTGTTTGATTCTTCTGCCACTGCTAAGGAATTCTCTAAATTGCTAGACGCCTCTGATTATGAATTAAGGTGCAGTGTGCCTCTTTCTTTTGGTCCTTGATTAGTACTTTGCAGTGCTTTTCTTGGGCATTCGGTGTCTCCACATACTGTACTCAGATGTTAAGATACGGTGCCTGGTGTGTCTTCATGCTGCTAGGAGTAAATGTTAAAGATGTTTTGTATCTGTACTACCAACTTCTGAAATACGACATTGACCTCCACAATAACTCAGCTGGACACTCTTGATATCAAAAGGGAGCAACCCTTCAGTAAGCAATGGCATTTTTAGGGAATAAAGGAAATCCCAttgttatttcacatttattaaattgctttcatcatttttttaaacatttatttaaaagttttgctCTAGAATAAGACCCCAGTCAAAAAGAATATGCTATCCTGACAAGTGAATTGTCCTTGAGAATTACATCAATACCAGACCTGGGAATGAAACACACGGAAgtgttaagtgtgtgtgtgcgtgcgtgtgcgtgtgtgtgtgtgcgtgcgcgcgcgcgctgtCTTTAACAGCCCAGTTAAAGTTCTGTATAGTGGAGCCGTTCAATTTGCATTGTTTACATCACCAGATGCCCAGATATGCACATTTTGGCAAGCTCTATTAGGTTGACATTTTCCAACGCTTTGGTCCATGTAATAACCCCGTaaaactttttgtattttgatataataaaaaaatataagaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156047 lncRNA downstream 44503 10969169 ~ 11028778 (-) True G105653
TU155793 lncRNA downstream 561018 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 561054 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 603844 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 611212 10461741 ~ 10462069 (-) True G105461
TU156059 lncRNA upstream 8333 11460380 ~ 11464483 (-) False igsf9ba
XR_006252620.1 lncRNA upstream 60599 11512646 ~ 11513531 (-) True LOC122358535
XR_006252619.1 lncRNA upstream 60599 11512646 ~ 11513255 (-) False LOC122358535
XR_006252636.1 lncRNA upstream 73819 11525866 ~ 11526684 (-) True LOC122358725
XR_006252606.1 lncRNA upstream 86865 11538912 ~ 11539834 (-) True LOC122358462
XM_043259249.1 mRNA downstream 771 11045951 ~ 11072510 (-) False arhgap32a
XM_043259248.1 mRNA downstream 771 11045951 ~ 11072510 (-) True arhgap32a
XM_043259250.1 mRNA downstream 12008 11045951 ~ 11061273 (-) False arhgap32a
XM_043259251.1 mRNA downstream 17068 11045951 ~ 11056213 (-) False arhgap32a
XM_043259257.1 mRNA downstream 218097 10773572 ~ 10855184 (-) True ncam1b
XM_043258278.1 mRNA upstream 80394 11532441 ~ 11533631 (-) True LOC122358470
XM_043258506.1 mRNA upstream 88026 11540073 ~ 11541164 (-) True LOC122358629
XM_043259881.1 mRNA upstream 93175 11545222 ~ 11546883 (-) True LOC122359552
XM_043258507.1 mRNA upstream 100854 11552901 ~ 11554310 (-) True LOC122358630
XM_043259584.1 mRNA upstream 121450 11573497 ~ 11575403 (-) True thyn1
TU155899 other downstream 412131 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 559219 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 869868 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 1276391 9763871 ~ 9796890 (-) True dynll2a
TU156053 other upstream 12728 11464775 ~ 11506177 (-) False igsf9ba
XR_006252707.1 other upstream 2003934 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 2294989 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 2426538 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 2431873 13883920 ~ 13905494 (-) True G106571

Expression Profile