RNA id: XM_043259257.1


Basic Information

Item Value
RNA id XM_043259257.1
length 4636
RNA type mRNA
GC content 0.49
exon number 20
gene id ncam1b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10773572 ~ 10855184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAGTTTCCAGGTTGGGTTCAGTGCATTATTTGATCATATCGCTGTCTTTCCTCAGAGGCTCCGCTGATTGGGCGGATTAATTCGCGTGCATCTTGAAGCGGCGTGTGCACGCGCTCTCGCCTCTCACCGTCTCAGCGCGCGACATATGGGCAAGCGAATTTAAACCGCAACAATATCGATACAGTCCAACGATCAGGATCCTCGTCCGCGTTCGCATCCCGCGCGGAAAACTTCGCGGGAACTTCGCAGGCACGATTTACGGATTTTACGAATTCTTCATCTCGAGCACGGGAGACGACAATAAACAGCAAACGCGCTGCGTTTCATAAAAGGGATTGCAATGTTTCCGACCAAGGCGATGATCTTGGTGCTTCTTTTCTTTGGCTGCGCAGttTCTCTGCAGGTCGATATTACACCTGCGCAGGGTGAGATCAGTGTTGGAGAGTCTCGATTCTTTTTGTGTGAAGTTATCGGCGGGGCCAAGGAAATCGATTGGTTTGCTCCAACCGGTGAAAAGATTGAGCCAGGCAGACTGGATATCAGCGTGATTCGCAATGACGAGACTTCCTCCACTCTCACCATCTATAACGCAAAGGTTGACAATGCCGGCACATACAAATGTATGGCCAGCAGTGGTGATCGGGAAGCTGAGGCCACCGTCAATCTGAAGATATACCAAAAAATCACCTTCACAAACGTCCCATCACCTCAAGAGTACGAAGGGGACAATGCCATTATAGTGTGTGACGTCATAAGTTCACCTCCGCCCACCGTCCTCTGGAAATACAAAGGTGCAAAGATCCAGTTTGAAAAAGATGTCCGTTTCAGGACTTTGAATAACAACCATCTCCAAATCCGAGGCATCAGAAAGACAGACGAGGGTGTCTACACTTGTGAGGGCCGCATTAAAGCCCGTGGGGAGGTTGACTTCCGGAGCATTAAAGTGGTTGTTAATGtCCTGCCCACTATACGAATCCGTCAAGCGGAAACGAACGCCACCGCTGACATGGGCTTCTCAACACTGCTGGCCTGTGATGCTGACGGATTTCCTGAGCCGATGGTGACCTGGGCACGgAACGATGTTCCACTGAAGAATGGCGATAAATACAGCTTCAATGAAGACGGCTCTGAGATGACAATACTAGATGTGACAAAGCTGGACGAGGGGGATTAcacatgcattgctaagaacaaAGCTGGGGAGAGCGAACAAGAACTTAGCCTTAAAGTCTTTGTGCAACCCAAAATCACATATCTAGAAAGCCAGACCACCACAGAAATGGACGAGCAGGTCACGTTAACATGTGAGGCCACCGGAGACCCCACGCCCACCATCACATGGAGCTTCGGCACCAGGGTCTTCACCGAGGGAGAGCAGAGTCCTGATGGTGATGTGTTGGTCCGCAGTGACGCCCGCGTGTCTTCTCTCACCCTGAAGTACGCTCAGTACACCGACGCCGGCGAGTATCTCTGCACCGCCCGCAATGCCATCGGAGAAACGGCGCAGCCCGTGTATCTGGAAGTGCGCTACGCCCCGAAAATCCTGGGCTCAGTAACGGTGTACACGTGGGAGGGCAACCCGGCCAACATCAGCTGTGAAGTGCTGGCTCACCCCAGCGATGTGTCGATTACGTGGCAGCGAGACGGTTTCCAGCTGCCTAACGCTAACACCTCCAATATCAAGATCTACAACACGCCTTCAGCCAGCTACCTGGAGGTCAATCCAGAGTCTCAGAGCGACTTTGGCAACTACAACTGTTCTGCCTCCAATGAGATCGGGACCGAATCCAAAGAGTTCATCGTGATCCCAGCTGATGTGCCCTCGGCGCCGTCCATCACTCAAGTGCAGCCGTACTCCAGCACGGCTCAGGTGCTTTTCGAGGAGCCCGAGTCCACTGGAGGAGTTCCTGTGCTCAAGTACCGAGCCGAGTGGAGAGCCGTGGGCCGAGGGAAATGGGCGCAGCGAGTCTACGAGGTGAAAGACGGACTGAGTTCAGTCACGGTCACCGGCCTAAAACCCGAAACCGATTACGAAGTCAAGATGTCTGCCATCAACGGCAAGGGCGAAGGCGACAGCAGCCAGTCACTGGTCTTCAAAACCGAGCATGTCCGAGAACCAAGTCCTCCTATACTAGAGGGCACCCTACAACCCAAAGGCAATTCTCTTAAAGTGAAATGGACCAAACAAGACGACGGAGGGTCACCAATCACCCATTATTTGGTCAGATACAAAGCTAGGGAAGACTCTGACTGGAAGCCCGAGATCCGTCTGCCCAACGTGAGCGAGTACGTAATGCTGATCGGACTGGAGTGGGACACCGAGTATGACGTGTTTGTGGTGGCAGAGAATCAGCAAGGCAAGTCCAAGCCCGGCACTCTGACCTTCAGAACTTCATCGGAGCCTGCAGCAACCACAGACTCCATGGAAGACGGGCCGGGCCTGAACACTGGAGTAATTGTTGGCATTCTCATCCTGGTGTGTGTGCTGCTCTTGCTGATCGTGGACGCCACCTGCTGCTTCCTCAACAAGTGTGGCATCCTCATGTGCATCTGCGGTAAACCCGGGCAAGGCACCAAGGGCAAAGACATAGAGACAGGCAAAGCTGCCTTTGTTCAAGATGTGTCTAAAGAGCCCATTGTAGAAGTGAGGACAGAGGAAGAGGCCACAGCCAATCACGACGCAGAAGGCCATCCTGAGCCCAATGAGACCACGCCGCTGACCGAACCAGAGCAAGTGACGGAAACTGCCGCCGCGGTGGTGGACTTGCCTCTCTCTGTGCCCACTAACTCAGACACGGTCACTGACACCTTTGACCTTAGCCAGAGCAGCCCAGTTAGCGAGAGCACCACCCTCACCTCCAGCATCACGGCGCCTCCCTCTGACCCTCTTAACCCCGCCCGAACGACTCCGCCCAACAGCAGCACGCCCAAATCTCACACCAAACCCTCCATCACGTCCACCCCGTCTCCCGACCCGGCTAGCGTTACTCTCCTGGTAGACCTGGGTGATTCCCCAGAGCCACGAGCTGAGGTTCCTCCGACGGTCCCTTCAGAAGAACCTTCCCCTCCCAGCGTCGTCCAACCAGATGCTATAAACTCAAAAGTCACAGAAAACGAATTTGAGTCGCCCGAGTCTCATGCCGCTTTAAATCCCATCAGCCCACAGGGCAGCGCCGCGATCCCCTTAGTGAATCATGAACATGTGATTGATGGAGAGCTCCCACTGGCTCCAGACACAGACGTCCCTCGGGATGGGTCACATGCTGTGGGGACAGCTGGCTCCAGTGGCCCATCTGTTCCAGCGCAGGACGAGAAAACAGTGGATGAGGAGAAGAGCACGAGTGAGCTGAAGAAAGCTGCGCGGGACGCTGGAGCAGAACCCAACGCCGTCACGCAAACAAACGCCACCGAAAGCAAAGCGTGAGGAGAGTGGAAACGTGTTTGTTTAACAGTGCCCTTAATGAATTTTCTGAACAAAATGGTACATCTGCAGACAGACGTTTTCATTTCTGATGTATGtacgcatttttttttcttttctttttgttaatttgATCAAGTTTCTGTATCACAGTCAAAACTTCATACACTTCAGAGATATCCTTACAGAGCTTCTCGTGTTTCTCTGTACATTCTGTCGTTTTTAAAGCAGGGCATCAAGTTATTCAGGAGAATGATTTATTCGAACCATTTATTTACAAAGtacattgttaaaatgtaaatgacttCTCCTATTTTTTTATCTTGAGTGTTTGAGGGCTAGGTTCGACGTGTTgttagttttgtgttttattatattttatcatgttttatttacacttgCCTGTTGGATGATAACTCGTTATGGCGGTTAcgtaaagacaaaaaaatatcgTAAGATATTTTAACATGCTGAATGTCTGATAAAGATTTCAAATAAGCCATTTGGTTCGCTACTGAAGTCTTCATTAGATGCGTTTTTACAATTATCGTGCGTTTCTAATATTCGGGATTTATACGTTAAACCATTCTTCCAACGTGCTCCTAAAGCATTGACTTACGCTAAAATATCTGCTCATTTTTATACCTTGTACCTCTGGAAATGTTTCGCACCGTCACCTGCAAGCTTGTGCACTGTGATCgtgttaccttttatttttttttttcttcgagAAAATTTGCATAGTTTTTGCAGCAACTGCCGATTGTCCTTTTATAACGCGACGTATGTTAACGGTCCTGCGTGAAAGTGGACTGATGGGACGCGTGGCTCTGAGAAGAGTTCTTATATCATCACTCATTGCATGACTGTCTGCTTGCCCGTGTCTGACGTTAAAACAAAGACTGGCCTGAACTGTTTACGTATCGGTTTGAGGCTGTCCGGTTGGAGGAATAGTGAAGATTGTCggttattttgattttaatgctTTCTATAATGtttgagagaatgagagagggTTTCGTTTTCCCGTTGTACACAAGTTGTTCAGTTGTTCACTGCCAGATTGCCCCAAAACTGTAAATTGTTTCATGTATTTGGGGACTTGACCCATGAAATAGCAGTATAATGGGTGAGCTTTACTATGATAAGCAAAGAACATGTTGTAAATTGTGTTGCtctaacacattttaattaaactcattAAAACATGAA

Function

GO:

id name namespace
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 261309 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 261345 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 304135 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 311503 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 366287 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 113985 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 218097 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 218097 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 313937 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 449799 11304983 ~ 11306514 (-) True G105694
XM_043259261.1 mRNA downstream 1434 10721967 ~ 10772138 (-) False zbtb16b
XM_043259259.1 mRNA downstream 1443 10721967 ~ 10772129 (-) True zbtb16b
XM_043259258.1 mRNA downstream 1445 10721967 ~ 10772127 (-) False zbtb16b
XM_043259260.1 mRNA downstream 3049 10721967 ~ 10770523 (-) False zbtb16b
XM_043258496.1 mRNA downstream 50074 10712618 ~ 10723498 (-) True LOC122358615
XM_043259249.1 mRNA upstream 190767 11045951 ~ 11072510 (-) False arhgap32a
XM_043259248.1 mRNA upstream 190767 11045951 ~ 11072510 (-) True arhgap32a
XM_043259250.1 mRNA upstream 190767 11045951 ~ 11061273 (-) False arhgap32a
XM_043259251.1 mRNA upstream 190767 11045951 ~ 11056213 (-) False arhgap32a
XM_043258498.1 mRNA upstream 218097 11073281 ~ 11111234 (-) True igsf9ba
TU155899 other downstream 112422 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 259510 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 570159 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 976682 9763871 ~ 9796890 (-) True dynll2a
TU156055 other upstream 230635 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 448237 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 474718 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 498657 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 609591 11464775 ~ 11506177 (-) False igsf9ba

Expression Profile