RNA id: XM_043259260.1


Basic Information

Item Value
RNA id XM_043259260.1
length 6264
RNA type mRNA
GC content 0.44
exon number 7
gene id zbtb16b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10721967 ~ 10772138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAATGTTCCAGAGTGTTAATACTAAATTAAAGGAGCACTCAAGGAGAGAAGCAAATCCGTGAGATGGTTCGGTAGATGTCGATGTCATGGATTTGACTAAAATGGGTGCGATCCACCTCCAGAACCCCGGCCACCCCACATCGCTCCTGCAGAAGGCCAACCAGATGCGCCTCTCGGGGACCTTGTGTGATGTGGTCATCATGGTCGACAGCCAGGAGTTTCATGCCCACAGAACCGTGCTCGCATGTGCTAGTAAGATGTTCGAGATCCTGTTCCACCGCAACAGCCAACATTACACTCTGGACTTCCTCTCACCAAAGACCTTCCAGCAAATTCTGGAGTACGCCTACACCGCTACGCTCCAAGCCAAGCTGGAGGACCTGGACGACCTGCTGTACGCCGCAGAGATTTTAGAGATAGAATATTTGGAGGAGCAATGTCTGAAGATCTTGGAAACCATCCAGGCCTCTGAAGAGAACGACACGGACGTGAATATGAACGAAAACGGCTCAGAGGATGCCGATGACCGCAGGATCAAGTACCTTAAGAGCACATTCATCTCTAAAAAGCATTCCATACAGGACGCCGGCCATCGCCATCGCTTGGCGCTGGTCAGCATGGTGGATAAGAGATCTACAGAGTCCACCCAACTGGGTCTTTCAACCGTCAGCCCGACTAAAGCAGCCGTAGAGGGCTTGATGAGCATGGGACAGTCGGTCCTCCAAGGCAACGTGACCCAGAGTTACTCAAACAACCTTGGTAACTCATCTCCGTTGCTAGATAAAATCAAGACTGAGATGATGCAGGTAGACGAGGACTACCAACACGAAGGCGGCTTCCCCAGGAACGGGGAGGGCGGAGGTGACTCCAGGCACCCCCGGGACACCCCTGGAACCCCGACCAGAGGCAGCGTCATCACCAGCGCCCGCGAGCTCCACTCCGCAGATAGTTCTGCTGATTCCCAAGGAGACAACAGCCAAGCGGGTCTAGTCAATATGGCCAGTCTGGCTGATAGACATTTCGCGTCACTGTGCTCTATCCCGTCCAACCATAAGAGCGAAAGCATGCTGCCCTTACCTGTGTCCATGGCCTCGTCCCTACATGTGCCGTCCTCCCTGGCCATGTCGATGGATTTCAGTGCCTATGGGGGGCTCTTCCATCAGAGCTTGATTCAGAGGGAGTTCTTAAGCAAGCTTGGGGATTTCACAGCGAATGTCAAGCATGAGGTCCAAACCCAGAAAGAAAGATGTGAGGTGTGTGATATGGAGCTGCCCGATAATGAAGCTGCTGAGCAACACAGGAAGTTGCATGGTGGAGTGAAGACCTTTGGCTGTGAGTTCTGTGGAAAGCAGTTCCTGGACAGTTTACGACTGAGGATGCACATGCTGTCTCATTCAGCTGGATCGAAAGCACTAGTATGTGATCAATGCGGCGCTCAGTTTTCCAAGGAAGACGCCCTGGAAGCCCATCGACAGACTCACACAGGCTCAGACATGGCAGTGTTTTGTCTCCTGTGTGGGAAGCGTTTCCAGACCCAGAAGGCTTTGCAGCAGCACATGGAGATTCACGCCGGCATGCGCAGCTACGTGTGCAGCGAGTGCGAACGCACCTTTCCGAGCCACACGGCGCTCAAACGCCACCTCCGCTCGCACACAGGTGACCACCCGTTCGAGTGCGAGTTCTGCGGGAGCTGCTTCCGTGACGAGAGCACTCTGAAGGGTCACAAGCGCatccacaccggagaaaagCCTTATGAATGTAACGGCTGCGGAAAGAAGTTCAGCCTCAAGCACCAGCTGGAGACCCACTACCGCGTCCACACAGGTGAGAAGCCGTTTGAGTGCAAGCTGTGCCACCAGCGCTCTCGGGACTACTCCGCCATGATCAAACACCTGCGTACCCACAACGGCGCTTCGCCCTACCAGTGCACCATCTGCCAGGAGTACTGCCCCAGCCTCTCGTCCATGCAGAAGCACATGAAGGCCCACAAGCCCGAGGACGTGCCCCCAGACTGGAGGATAGAGAAGACCTACCTGTACCTCTGCTACGTGTGAGACGGCCCGACGAAACCCAACGAGAAAGTGGCAGGATGCGCCCGAGGACAATTCACCTGAAAGTTTGCTTTTGGTCCAGGGACGAAGACGGTGAGGGGGCGTGGTCAAAGTGACGAAATGTGAcgtggatattttttttttgacctttcGTTTGTGACATGCATTCGTGCACATTTTTAGGATGTAACTGCACtcacaaatgtttatgaaaCGGAAATGTTATACGTGATAAAGGGATGTGAATTTGGAGAAAGTGTTAGTACAGTCCACCCCTATGACGATGATCCATTTTTCTGCATTCCACCCTGTCGATTGGAGAAATTCACTGCATGATCATACTTGTAATGTTTTGCTCAAATAAGGATTCCCATCACTTTTTTTCTCCGTGGACAGTACATGAGCCATAGATTTTCGAGACCCCGTGAAATCTGTCATAGGGATCATCCAGTAGGCTTTAGTTTCATCGCAGCCGTCGTTTTAAATGCATATCCGCTAAAATTCGACGTTCAGAATACGCTAGCAACCTAAAAGCTAACACAAGTGGACACGAAGCCTGCTATTTTGATTTCGTGGGGGTCTTAATGGAGCTATTCTGAGTCAAATAAAAAACGTGGACCAAAGCTgagaactcacacacacacgatgaaATAGAAGAGCTAAACACATTAGCGAACGAAATTATGCCCTTTTTTAGCAAATTGCTCCCTTAAGTTCATTATTAGGCTCTCTAGTCCtcaattttcatgttttttttataaatacatgcaagGAAATGCACAGGGTTGGACCCATTAGTCATTTTCTTTAAAGCGTAATAAAGTGCTtaacaaaacagcttttctcAGTGGTACATCCAAATTGTGCTGCCAAGCAACTGTAGTGGATGTTCAGGGACATTTATTCAACCTTAAATAACTACACTGTGCACTTTCAGAGTTTCAGAGGcccgtttttttttgttgttttcagcaCCATTTCTGCGTTCAGTGCATTCAGACGAAGCCAGAGAGGTGAATCTCTTTGATCTGCTTTCATTTCAGTCACTTTCACACCAAATAATGAAGCATGTCagttgatttcttttttttttttatgttcccaTGTTAACGTGGCGAAATCGCAGTTTTGCATCTACAGGCATTTTACCCGAATGACATGTTCATATCGTACCCATGAAtcaatttctgaattaaaaagagattattttttacatttaaaaaccacaATGCAGTATACGTCTCTGCGGTCTTCTGCTGAGGATAACTGTAGTTAGCTCGCCGTCGTAGTTTGTGTTCTGTCATCTCTGTTCGAACGTTTTACTTGAATTGCCTAATTTTGTTACCTCACATgctagatttatttttgtaccagTCTTTGTCTCTCATTTCCTGCTGAGCTTTGTTTAAAAGCTGTACGATGCATGTAGAATGCCACATCTTCAGGCCCTCACAGAATCCCAGAGAAATTTAAGAGAAAATTCGGATGTTGTTTGCGACGTTCAATATGCGGCCCTGTGTGTGCTTACGTTTTGGATAATTggcatatgttttatttatcaatatgATTGTAGTTCTTTGCATTTAactgtgtttaaatgtattctGCATTACTAAAAAGACGGTAAAGGTGTGGTCACATTTCCTTTTTGTATACCAACTAATACgtaactattttatattttggcaaTTGGTGATCAATTGTACAATTTCATTTATACTTTTTGTATACCATTGACGGTTAAGTTAAGggtgcatttaatgcatttttctaaaaatcGTCCATTTCTGCATAAATCTAATTGTAGGAATTCACACAAAATCACCTAATCATAAAACTGTTAGGTGGGAAATCCAGTCTTTTCTATAGGAATCAGCATGTTCAGAAATTTTACTCAAGAGTGAAAGAGTTCAATTTTTTCAGATTTCGCTGCAGGTTCAAATTTGCGGGGGTTTTTAAATCGCATTTTCGTACGAAATCACCTAAAATAGTTACGTTTTCTCATCAGATAAGGTTGGAAATCCTTTCTTTTCAATGCGAATCAATTCGATCAGCAATTTTACAGAAGGACGAAAGATCTCCATTTTAACAGATTTCGCAACAGTTtcaaattcttctttttttgaataaaaatcacGCAATTTCATACGAATGGCACCGTACGCATTCATATGAAATCGCCACCTCGTAAAAAGAGTTACGCTTCACCTGACGAGTCCTCGGACTGAGCGATGCGATTGGACGAACATTCTATAGACCTTCATCCTTACGTCTGTTCTCTTAAAACCGTACGTTTTCATATAAATAACACGCGCATTCATATAAAATTCACCCATAACTATGGTATTGACAATGGACCATTTTTTGCTTATGAAACGATTCTGAAATCTGCTAATGCGACCACATCTTAAATGCTGATTCCGTGTGGGTCTGTGTATTGTTCAGTGGTATTTTAGTGTTCAGCATAGTAGCAGTGTGCATATCAGCCTCTCGGCCATCTGTTTCAGGGCTACCTCTACTCTGCTCTCAGTTTTGCACTAAAGCAAAAGCacacttttgttttgcttgttttgctgTTTCATTCACATCCACTTTCATGTTTCCATTcactagagaaaaaaaaagaacgaaaaaACCAACAGCCCGGTTCGTCCGTCGTTATATTTTACACTCCTTACGATGAAACGCGTTCAAGTCTGAAAGGGTAGATGCATACGTTCTAGATGATTTTAGAATAGCGTTGAGAAAATGTTTAGTTATTAGATACTTGAGGGGATAAACTTGAAacaatgtgaataaaaatgatgtttttatgtGAAAATTATTAAAGCGGTAAGTCATCAGAGATGCGGTACTGATGCGTGCAGTTACGTGGAAAAAGTTCgctagagaaaacaaaaaaaaaaaaaccaataggtgattttctgtgaaaataaatctctCGACAAGAGCCAAACGCGGCACTTTGATAAGGGaatatgttgtatttttgtacGGGGTATTGTGCGACCCctgttccttgtttttttttttcattttgagtgaGGCGAATATTTTTATGGTATCTTTTGCATTTGTGCTTGTTCTTGATTTGcgtggaaaaaaaactgttttcttgtgcttattttacaatgttaaacATATACAAGTAGTagatgtttgtaaaaacatattgtagTCATTGCTGCTGGGTGTCAGTTCGTATGATGATGATTCCACATCTTGAGTATAAAATGACTGTGAGTGAACTAATGCCAAGAGCTGTAGGTCAAGGAGCACAAGCGACCTGCGAGACGAGAAAAGTAAAgctgtatctgtgtgtttgtatcgTGTTCACCGCTCACTGTAAGATTAGAGTCACCTATACGGTCTGTACTGGTCCttgtgtgtgcagtgtgagTCAATGTGGTCGACTTCTTCAGTGTTAAATACATGCACCGGTTAGCAACAAAGAGGTGCTCTTGACAGACACCCTGTAAATGATTTGATACGTCATCTGCCCTGTATTTGTGTCTTTATGCAAAGTCACCTTGATATGAACTGTGCTCTTAGGCAATCAGGGATGCCTTCACTTTACTCGCGGAACATCGCCGATACCGATTTTAGGATAAACACCTACACTTTCTTTGTCGTTACGGACGCTGCGTTTAGTTCCGTAAGCCCTTTTTGTTTTGGTCGCCACGAGCAATAAATCTACAGGTCAGCATTTAAGTGAAAAACCTGGCATCCCTGCCGCTGTATCACTGTGTTTTACTTTGCTTTCAGACAGGAAGTAGCCATGTCACTCAGTGCGCCCATGTTTGTGCCATCGTTACACAAATGAAAACTCGGACTGAGGCTCCACGTGGGACCAAACGACCATTTTCGCTCCATTTGCCTTGTTCTAGCGACAAGACCGCGTTCTTGGTGTCGAAATGGTTTTACATTTGTCGTGTTTTACTTTATTGTATTGTCTACCTCAGCACCAGTTCTTTGTGTAACTTTTAAAAGGTGCCCAATTATTGTTACTTTGTTTTGTGCATAAATTTTGTATTATAGCCTTgtagggtttttgttttttctctttgtttcagcATAGAGATGCTGTTTTGAAGCACTGTGTGGTGATTTTGATGCTGCAGATAGAGGTGTAGATTCCTTTTCCCTTCTCTATGTGGGTTCAGACACATCTCTGTATACGTCAGTGTTCTAAAATAAACTTGTAACAGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016567 protein ubiquitination biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 209704 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 209740 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 252530 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 259898 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 314682 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 198646 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 302758 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 302758 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 398598 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 534460 11304983 ~ 11306514 (-) True G105694
XM_043259276.1 mRNA downstream 13911 10707076 ~ 10708056 (-) True LOC122359108
XM_043259290.1 mRNA downstream 17519 10699729 ~ 10704448 (-) True LOC122359114
XM_043259266.1 mRNA downstream 22881 10694920 ~ 10699086 (-) True btr16
XM_043259262.1 mRNA downstream 27089 10689979 ~ 10694878 (-) False LOC122359098
XM_043259257.1 mRNA upstream 3049 10773572 ~ 10855184 (-) True ncam1b
XM_043259249.1 mRNA upstream 275428 11045951 ~ 11072510 (-) False arhgap32a
XM_043259248.1 mRNA upstream 275428 11045951 ~ 11072510 (-) True arhgap32a
XM_043259250.1 mRNA upstream 275428 11045951 ~ 11061273 (-) False arhgap32a
XM_043259251.1 mRNA upstream 275428 11045951 ~ 11056213 (-) False arhgap32a
TU155899 other downstream 60817 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 207905 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 518554 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 925077 9763871 ~ 9796890 (-) True dynll2a
TU156055 other upstream 315296 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 532898 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 559379 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 583318 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 694252 11464775 ~ 11506177 (-) False igsf9ba

Expression Profile