RNA id: XM_043259266.1


Basic Information

Item Value
RNA id XM_043259266.1
length 1958
RNA type mRNA
GC content 0.43
exon number 8
gene id btr16
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10694920 ~ 10699086 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAGTATGGATGAACCACCATTATCTCTTTCAGAGGAGCTTAAGTGCTCGATCTGTCTGGATGTGTTCACTGATCCAGTCAGCACTCCATGTGGACACAACTTCTGTAAGAGCTGCCTGAACCAGTGCTGGAACAACAGTCAGACCTACAACTGTCCGTTCTGTAAAGAAGCGTTCAGTAAAAGACCAGAGCTGAAGATCAACACTGCTCTCAGACAGGTCGTGCAGCTCTTTAAGGAAAAGTCTGGTCTGACTAAACCTGAGGTTCTCTGTGACATCTGTGACGATAAAGCCTTGAAGATGTGTCTGGTGTGTCAAAATTATTACTGTCAAACTCACCTGGAGCCTCATCACAGAGTCCaaaatttaaagaaacacaaactGATCGATCCTGTTGAGAATCGTGAGGACTATATATGTCAGAAACACGAGAAACCTCTGGAGCTGTTCTACAGAGATGATCAGACGTGTGTGTGCTTGCTCTGTGCTGTAACAAACCACAGGAATCATAACACTGTAGCTGTAGAAGAGGAGAGCGGAGAGAGAAGGCCTCAGCTGATGAAGATGCAGACGGACGTGCGGCGGATGATCCCGgacagaataaagaaaatacaaagcATCAAGCAATTAGCAAAACTCAGAAAAGAatcatcagagagagagaaagcagagaGTATGGAGCTCTTCACTGATCTGCTGCGCTGCATCGAGAGATGTCAGTCTGAGCTGCTGGAGATGATGGAGCAGAAGCAGAAAGCAGCAGAGAAGCAGGCTGAGGAGCTGATTAAAGAGCTGGAGCAGGAGATCACTGAGCTGAAGAGGAGAGACACTGAGCTGGAGCAGCTCTCACACACTGAGGATCACCTGCACCTCCTACAGATTTACCCATCGCTGAGCAGACCTCCACACACCAGCAGCTCCACTGACATCAGTTTTAGTGACACTCTGCTCAGTGTGGCGACCCTGAGGAAAACTCTGATACAGCTGCAGGAGACTCTACATGAGAAACTCAGTAAAACTGTACAACTGAAGAGGATGCAACAGCACGCAGTGAATGTGACTCTTGATCCTGATACAGCTAATGCAAAACTCATCCTGTCTGATGATGGAAAACAAGTCACATGTGGAGACATTAAGCTTAAAATCCCAGACAACCCAAAGCGGTTTGACACTTGTTGCTCTGTCCTGGCGAAAGAAGGTTTCAGCTCAggaagattttattttgaggtgCAGGTAAAGAGAAAGTCAGAGTGGGATTTAGGAGTGGTCAGAGAATTCTTTAACAGGAAGGGAATGATCACAGCAGGTCCTGAGTTTGGTCACTGGATGATAGTTCTAAGGGATGAGAATCACTATATGGCTTGTGAGTCTAttcctgtctctctgtctctgagaGTGAAGCCTCAGgttgtgggtgtgtttgtggattACGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAATCTAAATCTCATATTTATTCTTTCACTGGTCTGTCTTTCACTAAGAAACTCTTCCCATACTTTAGCCCCGGTGATAAAGACAAAGGTAAAACTGCAGCACCACTGATCATCTCACAtgtcaaacaaaataaatgaatttacaccatgaatagaaatataaaaataatgtagttTTAGTGCTACGAATACTTGCTGTTGTTAAATgatgaaatgtcttttttttcatttggaaagGTTTTCCAgtgtacatttttcatgttttctccAAAGCTTCAAAAATATTTCCTCAAGCTATCTGCTTTTTGTTGCTGTATCTGTGAAAGTGAAATTAGTTCTAAAGTCCTCTGTTCACTAGAAATGAACGGACCATCATGGGAAAAACAGGAAGGACATTTTAACAGGCAGCATATTTAATATGATGAGATCTTCATGTACGGTCTTAATATTCTtgaaatttctttaaataaacgCATTTTATTTCACCTGGTAATAAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 182657 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 182693 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 225483 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 232851 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 287635 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 270083 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 374195 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 374195 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 470035 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 605897 11304983 ~ 11306514 (-) True G105694
XM_043259262.1 mRNA downstream 42 10689979 ~ 10694878 (-) False LOC122359098
XM_043259264.1 mRNA downstream 209 10689979 ~ 10694711 (-) True LOC122359098
XM_043259265.1 mRNA downstream 5658 10683443 ~ 10689262 (-) True LOC122359100
XM_043259269.1 mRNA downstream 13676 10675380 ~ 10681244 (-) True tmprss5
XM_043259277.1 mRNA downstream 20183 10672615 ~ 10674737 (-) True pih1d2
XM_043259290.1 mRNA upstream 643 10699729 ~ 10704448 (-) True LOC122359114
XM_043259276.1 mRNA upstream 7990 10707076 ~ 10708056 (-) True LOC122359108
XM_043258496.1 mRNA upstream 13532 10712618 ~ 10723498 (-) True LOC122358615
XM_043259261.1 mRNA upstream 22881 10721967 ~ 10772138 (-) False zbtb16b
XM_043259259.1 mRNA upstream 22881 10721967 ~ 10772129 (-) True zbtb16b
TU155899 other downstream 33770 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 180858 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 491507 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 898030 9763871 ~ 9796890 (-) True dynll2a
TU156055 other upstream 386733 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 604335 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 630816 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 654755 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 765689 11464775 ~ 11506177 (-) False igsf9ba

Expression Profile