RNA id: XM_043259277.1


Basic Information

Item Value
RNA id XM_043259277.1
length 1429
RNA type mRNA
GC content 0.42
exon number 5
gene id pih1d2
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10672615 ~ 10674737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTTAATTTTGAGCATGGATATCGCTGGCTATGACAATAAGGCAGCTCTGCAGCAGGTGAATCAGTTTTGGTCGATGTTAGACGACATGTCTCAGAATAATCCCGAGGAGTACAGGACCTTCATTGAACGCCAGTTACGGGAAGGAGCGGAGTTTCACTCACCGCCTCAGCCGCACGCCTGCCTCCGCACTGCTCTGCTGGAACCAAAGGACGGAATATTGTACATTAACGTGTGTGGCTGGAAACGTGTACCAGCGCCCACTTCTTACAGTGACCCTGTTCCTGTTTGTGGAGGACGATTGGAGACAGTGACTGAGGAGAAAGgtCAATACAGTGTCATTGATGTGGCCTTCAACCCTGAGGTTCTGCAGACTGCAGAGAAAGACAAAAACGAGAAAGAGAAGCTTCACCTACTTGCTCTGAACTTCATCCGGCAGCAGCACAATCTGAAACTGTCCCAGCACTACAAACTCACCAAAGACAAACTCAAAGGCAGAATTCAGGATTTGAAGCAGCGTCTTATGTCGCCGCAAACGTGCAAATCTTCTGCCAAAACCCCACAATCTGAACCAGCCCCATCGCTCCTGCAGCAGATCTCCTCACTGCGCCTGGCTGAGAGTAATGAGGACTCAAACATCCAACTGAGCGTAGAGCAGGAGAATAAACCAGCCCGATCCGGTCTCATTGAGGTGATCTCCAGCACAGAATCAGACCAGCCACAGCCACAACAACCCAAGCATCATCTCACAGTCTGTCCCGATGGCAGCAGCTCATCCAGGAGCATGCAGCTAAGTGTCGAGCTTCCTGGGGTGAGATCTGTGTCACAGTGCCAGCTCAGCATCTCTCAGggtGATATTCTGCTGGAAGTAGAAGACCTTTATTATCTTCATCTACAGTTTCCTGAGCTGGTCAAGGAGGAGACTTGCACTGCAACgtttaataagaagaaacaaactctaaatGTTACAGTGGCTGTGTTATGAGAACACGTATTCGTCCAGAAACTGAGAATGTAAACACTATAGTTGTATTACTGACTGTTGTCTCCAGGATCGTTAGTTATTTCAATAATTATGTGCATCGTTTTTGGTCACAACAGATATTTTATTCGCAGAGAACCATCTGTTCCTAAAATTTTAAGTCCATTatagaaaataacaaaatagaTTCTGTTATAAGCCaacaattatttcattttattgctgtcaaaataaaatgattgctaATTTTAATAGATAATTGatgttaaaactgtttattattttgtttagatAAGTACAAAATAGAATACTAGAAACTAAAACctcattttaaagtgaatttagtAGAGTATGAAAAATGGATATTATTTTtggatttgctgaaaatgttagtatggaaaatgagaataaactaaatcagaaataaataaataatcatacaaaCCCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 160352 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 160388 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 203178 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 210546 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 265330 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 294432 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 398544 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 398544 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 494384 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 630246 11304983 ~ 11306514 (-) True G105694
XM_043259289.1 mRNA downstream 9027 10658934 ~ 10663588 (-) True cryaba
XM_043259268.1 mRNA downstream 14865 10652198 ~ 10657750 (-) True arcn1b
XM_043259252.1 mRNA downstream 34666 10582203 ~ 10637949 (-) True phldb1b
XM_043259253.1 mRNA downstream 42984 10582203 ~ 10629631 (-) False phldb1b
XM_043258494.1 mRNA downstream 158728 10512631 ~ 10513887 (-) True atf5b
XM_043259269.1 mRNA upstream 643 10675380 ~ 10681244 (-) True tmprss5
XM_043259265.1 mRNA upstream 8706 10683443 ~ 10689262 (-) True LOC122359100
XM_043259263.1 mRNA upstream 15242 10689979 ~ 10695000 (-) False LOC122359098
XM_043259262.1 mRNA upstream 15242 10689979 ~ 10694878 (-) False LOC122359098
XM_043259264.1 mRNA upstream 15242 10689979 ~ 10694711 (-) True LOC122359098
TU155899 other downstream 11465 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 158553 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 469202 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 875725 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 875725 9793748 ~ 9796890 (-) False dynll2a
TU156055 other upstream 411082 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 628684 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 655165 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 679104 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 790038 11464775 ~ 11506177 (-) False igsf9ba

Expression Profile