RNA id: XM_043259263.1


Basic Information

Item Value
RNA id XM_043259263.1
length 2825
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122359098
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10689979 ~ 10695000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATGATGAGATCTTCATGTACGGTCTTAATATTCTtgaaatttctttaaataaacgCATTTTATTTCACCTGGTAATAAATGTATGAGCGCATGTCTACGAGAAAAGATGGGAGGAGCTGTGACATCACTGCAGAACAATTCAGGCAATTTTAAGACCTGTGAAAGCTGAAAACTCGAACAGACTTAAAAGGGAAAATTAAGAGCAATGGCACAATCTTCATCAGCACCACAAAAACCAATCCAGGCCAGGAGAGGGAGTATGGATGAACCACCATTATCTCTTTCAGAGGAGCTTAAGTGCTCGATCTGTCTGGATGTGTTCACTGATCCAGTCAGCACTCCATGTGGACACAACTTCTGTAAGAGCTGCCTGAACCAGTGCTGGAACAACAGTCAGACCTACAACTGTCCGTTCTGTAAAGAAGCGTTCAGTAAAAGACCAGAGCTGAAGATCAACACTGCTCTCAGACAGGTCGTGCAGCTCTTTAAGGAAAAGTCTGGTCTGACTAAACCTGAGGTTCTCTGTGACATCTGTGACGATATAAAGCTGAAAGCCTTGAAGATGTGTCTGGTGTGTCAGAGCTCTTACTGTCAAAGTCACCTGGAGCCTCATCAGAGAGTCCcgcatttaaagaaacacaaactGATCGATCCTGAGAATCTTGAGAACTATATGTGCAAGACACACGAGAAACCTCTGGAGCTGTTTTGCAGGGATGATCAGACGTGTGTGTGCTTGCTCTGTGGAGTGAAAGACCACAAGAATCACAACACTGTTGCTGTAGAAGAGGAGAGCGGAGAGAGAAAGcCTCATCTGATGAAGATGCAGACAGATGTGCGACAGATAATCCAGGAAAGAGTGAAGAGATTACAAGACATCAGACACTTAAAAGAAGTAGAAAATGAatcatcagagagagagaaagcagagaGTATGGAGCTCTTCACTGATCTGCTGCGCTGCATCGAGAGATGTCAGTCTGAGCTGCTGGAGATGATGGAGCAGAAGCAGAAAGCAGCAGAGAAGCAGGCTGAGGAGCTGATTAAAGAGCTGGAGCAGGAGATCACTGAGCTGAAGAGGAGAGACACTGAGCTGGAGCAGCTCTCACACACTGAGGATCACCTGCACCTCCTACAGATTTACCCATCGCTGAGCAGACCTCCACACACCAGCAGCTCCACTGACATCAGTTTTAGGGACACTCAGATGAGCGTGGAGCCTCTGAGGAAAGCAAtgattcagctgcaggagacTTTAAATGAGAAACTCAGTAAAACCGTTCAGAAGATAATGCAGCATGCAGATACAAGAGTCTCTGACACTGAGAGCGTTCACAAGACAATGAAGCAATATGAAGAGAATGTGATGGATCCAGATACGTCAGTTATCTCCCCACTTCAGAAGACAATGCAGCAATATGCAGTGGCTGTGACTCTGGATCCTGATACAGCTCATCCAAATCTCATCCTGTTGGATCATGGAAAACAAGTGGCATACAGAGACATAAAACATGAGCTCCCAGACAACCTACAGAGGTTTGATTTCTGTCCCTGTGTCCTGGCAAAAGAGGGTTTCAGCTCAGGGagattttattttgaggtgGAGGTAACAGGAAAAACTGATTGGGATCTGGGAGTGGTCAGAGAATCCATTAACAGGAAGGGAATGATCACAGCAGGTCCTGAGTTTGGTCACTGGATTATAGTTCTGAGGGATGAGAATCACTATATGGCTTGTGAGTCTAttcctgtctctctgtctctgagaGTGAAGCCTCAGgttgtgggtgtgtttgtggattACGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAATCTAAATCTCATATTTATTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTTTCCATACTTCAGCCCTTTTAATAGCAAAGAAGGTAGAAACACAGCTCCACTGATAATCAGGCACAATAAATGAATGTACATTCAAATAAGATTAAACTACAGTATGAATACTTTCTGATTTCAAACGATGAAACAAATAACacacttaaaattaaatgacatgTAAAATATATCTGATGATATGATTAAAGTAGTAACCTATGTTAAAttcacagtaaataaaaaaatacatacaatttatggtgaaaaactggcagctgcAGTTGCCAGAATTCTACCATAAAATATACGGTAACAACATTTTGGTTTAGCggttttaagtaaaatttacagttaaataccgtaatttcataccgtaatttcaatttcaagtgatataatgttaatataccaacctattaaagtactgaaatctgttttgtagctttgaaatacactgataaccaccaaaagcagGTGGTGAAGAGAAGGTCACACGATGAACCAAAACCCATCACAAGCAgcctttaaatatgaacatatgcAGAAGGTGCttagtgtcattcacacaaacacattcaactgaaatatgcaataaacattcatttaaaaacatagtgattttaaagaaaaaaacatccaatTCAAACAAATTTTGAAATGCagtgcagggaattctgggaatgtcaatTTACCTGTAAATTTTACTGGAATTTATTGTTAacaatttaacagttttttactgtagcattttatctgttttttttttctgttcaaatcgtggtcatttttacagtgtctTTCTGTATTGCACATATCtgtctttactttttataagtACAAAGTGCTAATAATTAATGAAGAGTTTACcagtttttaaaggaacagtatGTATCTAACATTGAATCTTTATATGTACTAAtgtgaatgttttaataaaactattaatattaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155793 lncRNA downstream 177716 10475572 ~ 10512263 (-) True G105497
TU155790 lncRNA downstream 177752 10475572 ~ 10512227 (-) False G105497
TU155738 lncRNA downstream 220542 10466964 ~ 10469437 (-) True G105462
TU155737 lncRNA downstream 227910 10461741 ~ 10462069 (-) True G105461
TU155700 lncRNA downstream 282694 10406951 ~ 10407285 (-) True G105440
TU156047 lncRNA upstream 274169 10969169 ~ 11028778 (-) True G105653
TU156065 lncRNA upstream 378281 11073281 ~ 11452047 (-) False igsf9ba
TU156066 lncRNA upstream 378281 11073281 ~ 11117290 (-) False igsf9ba
TU156092 lncRNA upstream 474121 11169121 ~ 11171739 (-) True G105674
TU156122 lncRNA upstream 609983 11304983 ~ 11306514 (-) True G105694
XM_043259265.1 mRNA downstream 717 10683443 ~ 10689262 (-) True LOC122359100
XM_043259269.1 mRNA downstream 8735 10675380 ~ 10681244 (-) True tmprss5
XM_043259277.1 mRNA downstream 15242 10672615 ~ 10674737 (-) True pih1d2
XM_043259289.1 mRNA downstream 26391 10658934 ~ 10663588 (-) True cryaba
XM_043259268.1 mRNA downstream 32229 10652198 ~ 10657750 (-) True arcn1b
XM_043259290.1 mRNA upstream 4729 10699729 ~ 10704448 (-) True LOC122359114
XM_043259276.1 mRNA upstream 12076 10707076 ~ 10708056 (-) True LOC122359108
XM_043258496.1 mRNA upstream 17618 10712618 ~ 10723498 (-) True LOC122358615
XM_043259261.1 mRNA upstream 26967 10721967 ~ 10772138 (-) False zbtb16b
XM_043259259.1 mRNA upstream 26967 10721967 ~ 10772129 (-) True zbtb16b
TU155899 other downstream 28829 10658937 ~ 10661150 (-) False cryaba
TU155809 other downstream 175917 10513194 ~ 10514062 (-) False atf5b
unassigned_transcript_2150 other downstream 486566 10203327 ~ 10203413 (-) True trnastop-uca
TU155454 other downstream 893089 9763871 ~ 9796890 (-) True dynll2a
TU156055 other upstream 390819 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 608421 11303421 ~ 11304562 (-) False LOC122358622
TU156125 other upstream 634902 11329902 ~ 11331898 (-) False LOC122358625
TU156138 other upstream 658841 11353841 ~ 11357548 (-) False LOC122358627
TU156053 other upstream 769775 11464775 ~ 11506177 (-) False igsf9ba

Expression Profile