G171072


Basic Information

Item Value
gene id G171072
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 4533928 ~ 4577098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU253329
AGTCACAGCGAGCGTGTGTGTTCAGAGGAGTCTGTCGCCTCCGcggcaggtgtgtgtgtgtgtgtgtgtgtgggtcgaCGGCTGGCTTCGCTCGAGGACGCTCTCTGGATGTATGTGGATTGTTTGGCCGCTAAAGGACGGGTCCGGAGGAGATGTACAGAGCCCGTGAGGAATAACCCCGCAGGAAGCAGTGCTCTGGATTCTCGTGTTGACAGGACACTTCTCTCCTGAGACGGATAACGTGGTTGAGCTGTACTGTGATGTTCACTTCACTGATACACATTCATGTTTGGATGCACGCGCTTTGCTGACCATCTCAACGATGCCTGTGAGTTATTCATGAAACTGGACCAGGTGTACTCCGGGATGTTAGATGTGAAGCTTCACGCAGATTTGAACGGCGGCGTCGGGGCAGACCTGTGGACGAGTGACCGCTGGTTTCTCCACATCATGGAGTGGTCAGAGATACCTGGAGATCTCGTTTCAGTTGTGTGGACTATCATGGCATTTCTTTTTACCACGCTTTGACTGCAGATACCGGATTAATCAGACTATTTTCTACTTTACATCAGTTGTTTTCTACTGATGGGTCAGTACACTGTTCCAGTCATGCtaaaatatacaatacacaCCTTATTTATGATGAACCAACCGTTACATTTTTCACCGTTGTTTTTCAAATACGATTTATGTGCCAGAAACTAGATCTTCTAGCTAtctaataaatactgtaaattgaaaatgaagtaaattgtgctaatatttcaataatatttcttCATATTGTAAATGACTACAGTATAGCACAATCCATCGGGTCCTCTTGTGCAATATtgcttccttttaaaatatattttatgtgtgtaattgatatactattattttttgaattgtCCTgaatttttgcttaaataaaaatgaagtggaTC

Function

GO:

id name namespace
GO:0005770 late endosome cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0010008 endosome membrane cellular_component

KEGG:

id description
ko04144 Endocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU253329 True 929 lncRNA 0.43 3 4533928 4577098

Neighbor

gene id symbol gene type direction distance location
LOC122331510 NA coding upstream 54395 4466079 ~ 4479533 (+)
LOC122331662 NA coding upstream 69497 4461252 ~ 4464431 (+)
si:ch211-165i18.2 NA coding upstream 74199 4457512 ~ 4459729 (+)
LOC122331661 NA coding upstream 132275 4399916 ~ 4401653 (+)
LOC122331545 NA coding upstream 144654 4386170 ~ 4389274 (+)
LOC122331521 LOC107573535,LOC107571679,LOC107710299,LOC107574960 coding downstream 176293 4753391 ~ 4765488 (+)
LOC122331589 NA coding downstream 198285 4775383 ~ 4777184 (+)
LOC122331666 NA coding downstream 204081 4781179 ~ 4782213 (+)
LOC122331582 LOC107571813,LOC107661922,LOC107758411,LOC107758408 coding downstream 226760 4803858 ~ 4805435 (+)
LOC122331584 LOC107661924,LOC107571811,LOC107758410,LOC107571812 coding downstream 230753 4807851 ~ 4811924 (+)
G171079 NA non-coding upstream 13449 4520253 ~ 4520479 (+)
G171068 NA non-coding upstream 85977 4447031 ~ 4447951 (+)
G171067 NA non-coding upstream 87939 4445712 ~ 4445989 (+)
G170960 NA non-coding upstream 365515 4168103 ~ 4168413 (+)
G170956 NA non-coding upstream 420253 4113261 ~ 4113675 (+)
G171075 NA non-coding downstream 3693 4580791 ~ 4595573 (+)
G171073 NA non-coding downstream 21651 4598749 ~ 4606693 (+)
G171087 NA non-coding downstream 34054 4611152 ~ 4611414 (+)
G171092 NA non-coding downstream 38728 4615826 ~ 4616247 (+)
G171149 NA non-coding downstream 125321 4702419 ~ 4703497 (+)
proza proza,LOC107573529,LOC107732003,LOC107576663,LOC107680190,LOC108438900 other upstream 345675 4182175 ~ 4188253 (+)
G170961 NA other upstream 364898 4168634 ~ 4169030 (+)
G170953 NA other upstream 428798 4104474 ~ 4105130 (+)
G170923 NA other upstream 559126 3973639 ~ 3974802 (+)
LOC122331563 NA other upstream 1137105 3122302 ~ 3396823 (+)
G171269 mgat5b,LOC107562046,LOC107743022,LOC108274344 other downstream 568056 5145154 ~ 5155135 (+)
LOC122331671 NA other downstream 583375 5160473 ~ 5168105 (+)

Expression


Co-expression Network