LOC122331548


Basic Information

Item Value
gene id LOC122331548
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 4087905 ~ 4091116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229060.1
CGTTCAGTGAAGCGCGCTGAACCAATCGGAGCCGATCACGGCTGAAGCGTCCGCCAACGAGCGTCCGCGGGAGGAGCGCCTCAAAGTCCGGCTGCCCGTCCTGAGCTCCGTCAGTGCGCCTCCGAGCTCCTGGATGGACCGCAGCAGCGTCTGAACCCGGGACACCTCGCCGAAGCGCTCATCATGACGGAGGAGCAGGATAAGTCCGGCGCGGAGCCGCCGTGCAGCCCCGCCGCCTCGTCCAGCTCCATGTCCCCCGAGGAGTCCGACTCGGACGCGCCGGCGTCCCCCGCGGCGCTCATGATCGCGAAGCTGGAGCGCGAGGACGAGCGCTTCCCGGCGTGCATCAGGGACGCGGTGTCCCAGGTGCTCAAGGGCTACGACTGGTCCCTGGTGCCCATGCCGGCGCGCGGCAGCGGCGCGATCAAGAGCAAGCCGCACGTCAAGAGACCCATGAACGCGTTCATGGTGTGGGCGCAAGCGGCGCGCAGGAAGCTGGCGGATCAGTACCCGCACCTGCACAACGCCGAGCTCAGCAAGACCCTCGGGAAGCTCTGGAGGCTGCTGACGGAGAGTGAAAAGAGGCCGTTCGTGGAGGAAGCCGAGAGACTGAGAGTTCAGCACAAGAAGGATCACCCGGATTACAAATACCAGCCGAGGCGCCGAAAGAGTGTGAAGCCCGGTCAGAGCGAGGCTGAGGCCGGCGCCGATCTCACCCAGCACATGTATAAAGCTGAACCGGGGATGGGTCGACTGGGGGCTCCGGCCGATCACACagGCCAGCCTCATGGACCCCCGACACCCCCCACGACGCCCAAAACGGACCTCCATCACGGAGGAAAGCCAGACCCCAAGCACGAGGGCCGGCGCCTGCTCGACGGCACGCGACAGAACATCGACTTCAGCAACGTGGACATCTCGGAGCTGAGCACGGACGTCATCAGCAACATGGAGGCCTTCGACGTGCACGAGTTCGACCAGTACCTGCCCCCGAGCGGCCACGCTCCAGACGGGCAGAGCGGCGGCTCCTACGCTTCGCCCTACGGCGGCGGGGCCTCCTGGAGCCGCAAGGGCCCCGCGGCGTCCTCGCCGGCCGCCACCAGCGAAGCCGGTCAGCACAGGGCGCACATTAAAACGGAGCAGCTGAGCCCGGGTCACTACAGCGAGCACTCGGCCGGCACGGCGTCTACAGCGCCACGGGCCTCGGCCGGCTCCGCCTCCTTCGCCAGCTCTCAGTGTGACTATACAGACCTCCAGAGCTCGGGATACTACAGCCCGTACCCCGGCTACCCGTCCGGCCTCTACCAGTACCCCTACTTCCATTCCTCGCGGAGGCCATACGGGAGCAACATCCTCAACGGCCTGCCCATGCCGCCCTCACACAGTCCCTCGGCCAGCTGGGATCAGCCGGTTTACACCACGCTCTCCCGGCCGTGAGGCCCGGCGCGGCGTGCTACGTCCCGTACTATAATGAAGGACGATCGCCACGATTTCGCCAAGCAAGACGTTCCAGGATGGGGTTGGGATTCCACAATTGGATAATTAAAGCCGCAGGCCATAAGTTTTGGCGCCCctgcggttaataaacagaactgcgtGCATCTTGCGGAAGAACATTGTGGGCGGAGCTACTTCTTTCTGTTTATGTCTGAATACACAGGTACTGGGCTCCTCCGCTGCGGTACTTACCCAAACTGGTCTAAATAGCCCCAATATAAACACTTACATAGGTGTGCCGTAGTGATTCAGGAAAAGCCAAAAACACGTTTAGGAAAATGGATTtcaattttgtatatttttttgaacacaaaaatcGAGAATCAGATATTTGTCgtaaaatgaacatttccatTCCACTTGTCAATTTCTGTgtgcacatcttttttttttttgtggtcaaaatttttttttaat

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229060.1 True 1914 mRNA 0.61 3 4087905 4091116

Neighbor

gene id symbol gene type direction distance location
LOC122331551 NA coding upstream 115518 3964279 ~ 3972387 (+)
LOC122331511 NA coding upstream 148087 3932183 ~ 3939818 (+)
LOC122331524 NA coding upstream 200570 3883495 ~ 3887335 (+)
LOC122331553 NA coding upstream 256715 3827259 ~ 3831190 (+)
LOC122331583 NA coding upstream 287098 3792277 ~ 3800807 (+)
LOC122331590 NA coding downstream 85355 4176471 ~ 4178576 (+)
LOC122331578 NA coding downstream 87459 4178575 ~ 4179598 (+)
gprc5ba gprc5b,gprc5ba,LOC107721060,LOC107670358,LOC107574037 coding downstream 99244 4190360 ~ 4210087 (+)
LOC122331545 NA coding downstream 295054 4386170 ~ 4389274 (+)
LOC122331661 NA coding downstream 308800 4399916 ~ 4401653 (+)
G170945 NA non-coding upstream 33051 4054640 ~ 4054854 (+)
G170944 NA non-coding upstream 44537 4042739 ~ 4043368 (+)
G170940 NA non-coding upstream 74149 4013443 ~ 4013756 (+)
G170939 NA non-coding upstream 74895 4012654 ~ 4013010 (+)
G170904 NA non-coding upstream 89248 3623277 ~ 3998657 (+)
G170956 NA non-coding downstream 22145 4113261 ~ 4113675 (+)
G170960 NA non-coding downstream 76987 4168103 ~ 4168413 (+)
G171067 NA non-coding downstream 354596 4445712 ~ 4445989 (+)
G171068 NA non-coding downstream 355915 4447031 ~ 4447951 (+)
G171079 NA non-coding downstream 429137 4520253 ~ 4520479 (+)
G170923 NA other upstream 113103 3973639 ~ 3974802 (+)
LOC122331563 NA other upstream 691082 3122302 ~ 3396823 (+)
LOC122331512 NA other upstream 1072636 2425141 ~ 3015269 (+)
LOC122331570 NA other upstream 1166708 2852212 ~ 2921197 (+)
G170683 NA other upstream 1274866 2631377 ~ 2813039 (+)
G170953 NA other downstream 13358 4104474 ~ 4105130 (+)
G170961 NA other downstream 77518 4168634 ~ 4169030 (+)
proza proza,LOC107573529,LOC107732003,LOC107576663,LOC107680190,LOC108438900 other downstream 91059 4182175 ~ 4188253 (+)
G171269 mgat5b,LOC107562046,LOC107743022,LOC108274344 other downstream 1054038 5145154 ~ 5155135 (+)
LOC122331671 NA other downstream 1069357 5160473 ~ 5168105 (+)

Expression


Co-expression Network