CI01000004_04172679_04173047 (PBX1)


Basic Information

Item Value
gene id CI01000004_04172679_04173047
gene name PBX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4171654 ~ 4174352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_04172679_04173047.mRNA
GTTTAAATAGGGAACATACTAAAACTAATAACTAATTCAAAACAATAAAGAGCATTAGTGCTTGTTTTTTCCATGATTTGGGGTAGTAAAAGACACCAGTTTGTATAAACCAAACAAATATATTGCTCTTTATGTCAAATTCCTTCACTTAAGGGAGAAAGGGAATAAGTTTGAAAGCAATCTGAAGTGAAAGCGGGGAGGAAATGTCATTATAGACCATAATGACTTGATGCTTCCGCCATTTCCGGAATCAGTTATATTTTCATCGACTCGCAGACGGTGTCCTCAAAAACAAACAGAGTGAGGAAATGACTCCAAATGAAATCTACGACAACAGAGTTGTTTGGACTGCTCTCTACGATAAAAGTAAGCATTTACCTTTATCTAATGGACGGCTTTTGATGGTTTTATGGGGAAAACATGATAATCAGCTTTCAAATGGTCAATGGAGTGACCTCCACACATCCTATTTCACGTTTTATACAAAGATGTACAAGAAAAATCTGTTTTTACAGGGCAAAAATTGTCAAAGGAAATACTTTTAATATAGCTGAATTGATATTGGAGGGTCTTTTGAAAAATAAAAAAGGAAAAACAACAAACAAACAAAAAGAAATAGTCAATATATCACTATGAACGAACAAAAGAGGGAATAATTATTGATCGTACCGACAAGGAGAGCTTCCTCTCAACACTATATCAAGTTGTATCTGTTATTTTTTTAGAAAACAAAGACTGTTGTTTTCTCATTTTTCTTTCTTTTTTTTCTTTTTGCTGAGAGGTAGAATGAAGCATTTAAATTGAAACACAATGACTGGTTGTTCCATCATTAACAATAGCCTCATAAGACTGAAACAGTCACAGGTTAGTTAGTCGCCCTGTGCCACCTAAAAGACACTGTGAAAACTGTACAAACACATTTTTTTTTTTTTTTTTTTTTACATTTTCAAATTCATAATTGTTTTCTAAAATCTTGTAAAGTATCCCAAATGTTCCACGGTAGTATGGCATGATTGTGTATGACCATGTGGGACGTTAATCCAAATCTGCGGAGGGTGGATCGCTGGATCTTTAGCGAGAGCAGTCTGAAGATCCCAAGCGCTTTGGGGATGGATGGTGCTGATCAGTTGGAGGTGTCAGAATGGACACTCCCGGGTCCTTCCGTGGGCGAGGTCACTGAGGAGGGTGTCGGGGCGTCTTGCCAGCCGCCGTTCGCCTTTCATGAGGAAAAAGCAAAAGACAAAACTATGAAGTGTATATTTCAAAACACAACGCTCATCCGAATGAAAAGACACATGCGACCCTATAGTGAAATGGAAATGAGAGCGACTATAATGAATTCCCTCACTATAAACACACTTTTGCAGGAAGTGAGTCACAAAGTGAGGCAGTAAAAAGGAACGACACTATGCTGAATATTACGAGTCATAGCGAGTCATTTCCAGAACATGATTTTCAAAAGACAGATGATGGAGGAATCAATTATTGCAAATTATCACATTGGCTAAAGGAATGAAAGTATAATGGGCACCTAAAATGGAGGCCATTTCATGTCCGGGAGACAGGTTGCCTAAAGAGCATTTGGGGCATTAATAGCAATTTCCATGCCATCAGAAAAAGGACTAGAAATGGGCTTTGGCAGCCTCTTATTTTCCCAGCCTGTTATTTTAGATAGAGGCAGTCTGTAATCAAAAAAGAAAGAGCAGAGCGAGGAGAGAAAAAAACTTTTCAAATCTTCAGCTTTGGTGACACCCCATGTCTATTTCAAAGGCGTAATTACAGCGCATGGGCGAGAGGAAAGCTCCCCCACATAAATGCTTTATGTCTCAGGCCGTCATTATTCACCGAAAAAAGGCGAATAACTTATCTGGGTGGAGAAGGAAAAACATCATGTTATTTAAGACAGTGAATTCTGTCTTAAATAAGATTGAGACACTTTCTCTGGCTACATTATCACAGCGTTACGATGCAAATGTTCAGGCTGCTGCTTTCTTCTTCTTTTTATTTTTTTTTTTATTTATGGTTACAGGTGTTTATGTATAAAATATTGTTGATTTAATTATTGATACGAACAAGTTGAGATTTATAAATCTGTAACAGAAATCACTGCAAGAAACATGTCACTGAAAAGCATCAATGTAATAAAAATTTTAATTTAATATGGGACAATAATTTAAAGGGGTCATGAATTGAGAAATCAAATTTTCTTTGATCTTTTGACATTGGTCATTGTACTATAAAAAATATCCTAAAAGTTTCAGAACTCAAAGCTTCCTTGTTAAAAACAGCTTTTATTGAAACCAAGCTCAGAAAACGTCTCGTTTTGGATTTTGTCACATTATTATGTCATAGTGTGACGAAAGAACACCTCTGCAGAAGAAGATCAACGGTTACTTCTACATCGTTGCTTCTTTAGCCCTGCCCACCGATTTTGCCATATCATGTAGTAGTAAATACGAGACAGATACAAACACAGGATTACTCCAGCAGCTAAATGATAGGATTGTAAGACGTTTTAAAGTACCACGTTGTGGAAAAACACAGTCTTTGCATTGCCTTCCTTATGATCCTAACATTAAGAAAGCGTGAATGAAGTTCCAGTCAGATTGCGTCAGTAAGACACTGTTCGTTTGTTCGCTTCATTTTACTGCAGATTCGTTTTTAAACAGTTCGACCCAGGCTTTTCAGAGTGACTAAGA

Function

symbol description
pbx1 Enables transcription cis-regulatory region binding activity. Contributes to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of DNA-binding transcription factor activity. Located in cytoplasm and nucleoplasm. Part of RNA polymerase II transcription regulator complex. Implicated in B-lymphoblastic leukemia/lymphoma.

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_04172679_04173047.mRNA True 2699 mRNA 0.37 1 4171654 4174352

Neighbor

gene id symbol gene type direction distance location
CI01000004_04123289_04123846 NA coding upstream 47691 4122624 ~ 4123963 (+)
CI01000004_04048829_04053849 NA coding upstream 117084 4045928 ~ 4054570 (+)
CI01000004_03934726_03935639 NA coding upstream 235784 3933685 ~ 3935870 (+)
CI01000004_03878083_03909016 NA coding upstream 262345 3878019 ~ 3909309 (+)
CI01000004_03814120_03839793 NA coding upstream 331847 3814051 ~ 3839807 (+)
CI01000004_04231304_04239652 NA coding downstream 56859 4231211 ~ 4240123 (+)
CI01000004_04315741_04317415 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding downstream 140424 4314776 ~ 4317616 (+)
CI01000004_04400735_04404462 ELOVL1A coding downstream 226070 4400422 ~ 4404786 (+)
CI01000004_04412723_04413196 NA coding downstream 237249 4411601 ~ 4413196 (+)
CI01000004_04414110_04428551 CC2D1B coding downstream 239758 4414110 ~ 4428551 (+)
G27044 NA non-coding upstream 3405 4168046 ~ 4168249 (+)
G27027 NA non-coding upstream 72936 4098327 ~ 4098718 (+)
G27025 NA non-coding upstream 89339 4080971 ~ 4082315 (+)
G27024 NA non-coding upstream 93068 4078271 ~ 4078586 (+)
G27023 NA non-coding upstream 93869 4077566 ~ 4077785 (+)
G27133 NA non-coding downstream 146807 4321159 ~ 4321368 (+)
G27138 NA non-coding downstream 160693 4335045 ~ 4335330 (+)
G27146 NA non-coding downstream 180965 4355317 ~ 4355544 (+)
G27166 NA non-coding downstream 236092 4410444 ~ 4411305 (+)
G27159 NA non-coding downstream 261829 4436181 ~ 4436502 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 619208 3550329 ~ 3553423 (+)
G26245 NA other upstream 649261 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 1412716 2745885 ~ 2769135 (+)
G25992 NA other upstream 1434886 2736536 ~ 2736768 (+)
G25882 NA other upstream 1598605 2548075 ~ 2573049 (+)
G27805 NA other downstream 1198473 5372825 ~ 5373803 (+)
G28165 NA other downstream 1558237 5732589 ~ 5733001 (+)
G28302 NA other downstream 2295676 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 2396868 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 3480420 7654234 ~ 7656383 (+)

Expression


Co-expression Network