gatd3l (es1,LOC107553036,LOC107671040,LOC107713034,LOC108430344)


Basic Information

Item Value
gene id gatd3l
gene name es1,LOC107553036,LOC107671040,LOC107713034,LOC108430344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2948990 ~ 2952684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246714.1
CTCAGCAGTGTGATCATGTTGGCATCACGAGTACACCTCGCCAAGCAGGCCGCAGCCATGCTGGTGCGCCAACCCGCCTGCCTGATGCATCATGGGGGAGACTGGGGCAACTGGGGCAACACCAACATTGCTGTGGTTTTCTCAGGCTGCGGTTGGTGGGATGGAACTGACATCCACGAGGCTGCGTACACCATGTACCACTTGAGCCGTAATGGAGCACGTTTTCAGATCTTTGCCCCAAACCAGCAGCAAATGCATGTCATGGACCACATGAGGATGCAGCCATCATCAAGTGACAACagGAACATGATGATGGAGTCTGCGCGATTCAGCCACGGCCAGGGCATGATGCAGATGAACGACCTGTCCAAACTGGACGTTAACAGCTTTGACGCCGTCATCTTCCCTGGAGGCCACGGAATAGTCAAGAACCTGTCCACCTTCAGCAAAGACGGCAAAGACTGCAAGCTGAATAATGACGTGGAGAGAATTATGAAGGACTTCCACCGCGCTCGCAAGCCCATTGGTCTGTCCAGCATGGCTCCTCTCCTGGCGTGCAGAGTTCTGCCCAATCTTGAAGTCACGATGGGCTACGAGCGGGACGAGAGCAGCCGCTGGGGTCGCTGGCCCAACACCAACATGGTGCAGGCGGTCAAGAGCATGGGGGCCCGTCACAACAACCGTGAACCTTACGAGGCCTATGTGGATGAGAAAAACAGGGTGATCAGCACTCCAACCTTCATGTGGGAGACTGACTATCACTACCATTACATCTTCGATGGCATCGGGAACATGGTCAAGCACGTCATGCGTATGACTGCCAAGTGATTCCCATGAGATGCAATCAAGACACCAGAAGGCTTTCACACTTAACTTTAGGTTGACCTGAATCCGCTATTATGTGGACATACAGAGAGTAATAAAGAAAACCATACAGTGCAA

Function

symbol description
es1 Acts upstream of or within mitochondrion morphogenesis. Located in mitochondrion. Is expressed in eye and retinal cone cell. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3).

NR:

description
PREDICTED: ES1 protein, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246714.1 True 942 mRNA 0.53 7 2948990 2952684

Neighbor

gene id symbol gene type direction distance location
LOC122350330 LOC107553039,LOC107714575,LOC107670999,LOC107552195 coding upstream 1641 2943281 ~ 2947349 (+)
tmem127 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107714579,LOC106579884 coding upstream 5785 2939263 ~ 2943205 (+)
ufd1l ufd1l,LOC107670987,LOC107713022,LOC107553030,LOC107699633,LOC107552148,LOC107714583 coding upstream 15485 2930254 ~ 2933505 (+)
cldn5a cldn5a,LOC107713023,LOC107552167,LOC107714561,LOC107553040,LOC107699651,LOC107670982 coding upstream 35253 2912692 ~ 2913737 (+)
srrd srrd,LOC107699635,LOC107714588 coding upstream 122694 2824272 ~ 2826296 (+)
adra1aa adra1aa,LOC107553034,LOC107699645,LOC107552152,LOC107713032,LOC107671010,LOC108430341 coding downstream 62665 3015349 ~ 3033899 (+)
lrrtm4l2 lrrtm4l2,LOC107714548,LOC107674311,LOC107696910,LOC107584861,LOC107713015 coding downstream 544740 3497424 ~ 3525944 (+)
vsig8b LOC107696914,LOC107713026,LOC107552198,LOC107714559,LOC107584864,LOC107674302 coding downstream 602914 3555598 ~ 3568917 (+)
LOC122350663 tas2r202,LOC107696909,LOC107713025,LOC107552176,LOC107584865,LOC107714564 coding downstream 622847 3575531 ~ 3576550 (+)
nefmb nefmb,LOC107714570,LOC107674305,LOC107751590,LOC107552168,LOC107751596,LOC107696904 coding downstream 695318 3648002 ~ 3652067 (+)
G60369 NA non-coding upstream 314975 2632717 ~ 2634015 (+)
G60361 NA non-coding upstream 336763 2610317 ~ 2612227 (+)
LOC122351006 NA non-coding upstream 389942 2557030 ~ 2559048 (+)
G60347 NA non-coding upstream 424856 2520830 ~ 2524134 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding upstream 526773 2408095 ~ 2422217 (+)
G60452 NA non-coding downstream 332 2953016 ~ 2953994 (+)
LOC122349907 NA non-coding downstream 46223 2998907 ~ 3000982 (+)
G60660 dpysl2a,LOC107552153,LOC107713031,LOC107671020,LOC108266046,LOC108430340,LOC107560268,LOC103154404 non-coding downstream 102743 3055427 ~ 3056019 (+)
G60661 NA non-coding downstream 103615 3056299 ~ 3057846 (+)
G60668 bnip3la,LOC107552154,LOC107714550,LOC107699644,LOC107560275,LOC107671016 non-coding downstream 124192 3076876 ~ 3080723 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 909154 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 913010 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 928956 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 1030619 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1730186 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 895930 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 972177 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1076619 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2151886 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2274268 5226952 ~ 5229608 (+)

Expression


Co-expression Network