LOC122349907


Basic Information

Item Value
gene id LOC122349907
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2998907 ~ 3000982 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251539.1
CTGCAAGGTCACACTTTTCATGCAGACAGAGATGAATACGCCTCTGAATATCTGCCTCTGTTTCTGAAGGCTGTCAAGTCACTATAGAAGCACTCATCGCTGCATTTCATCACTGAAAGGTGATCAGGCTGGTTTGCTTGAAAGAAATTATACAACAACAGATGTGCGTCTCTTGCTGTTTCGCTGGATGTTTCCTGAATGTTCGCTCGTCTGCGTTGAAGGTTAAAAAGTGACTTCGGTTGGAAAGCAGAGAAATGACTCATGTTGAGGACGGGGGTTCTTCAAGACACGTTAAGGAAAAGCCGAATAAACGTACAAACGCATCATAAAAGCGGATTGGTTCCAGGACAGAGATGCACAGCCGCTCTTAGACACACCACTTAATTTCAACACACAACATCATCCACGAGTTTGGTAATGGCTCCACTCAGCATTAATTACGCCATCTAGCCTCCGGTTTCACCTCGCCATCGCCCTGAAACGCTCCACTGCACCATCAAACAGCGGAAGGGTAAAAAAGGTTCACTTTCACAACACCGGTCAATATATGGATCGCCGTGTGGACGGTGGTCTTATTTAAAGTCTGGGAGACGGGGATCGATTGAGACGCTGGACCACTGATCCATCACATCTTTCGCTGTGGGTGCTGTCTGAGGTCTGTCAAGTCCATTGTCTTGACCACGTTTTACAGACCAGCGAGTATTCGCTTAATGTTCGGAGTCGGGTTGGTGTTGAATTAACATTGATCAGACCAAGCCTGCAAGCTAGGAATGGAATCTAAAGCGCTAGAGTAATTAAACCTAATTATTAAAAGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251539.1 True 817 lncRNA 0.46 3 2998907 3000982

Neighbor

gene id symbol gene type direction distance location
gatd3l es1,LOC107553036,LOC107671040,LOC107713034,LOC108430344 coding upstream 46223 2948990 ~ 2952684 (+)
LOC122350330 LOC107553039,LOC107714575,LOC107670999,LOC107552195 coding upstream 51558 2943281 ~ 2947349 (+)
tmem127 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107714579,LOC106579884 coding upstream 55702 2939263 ~ 2943205 (+)
ufd1l ufd1l,LOC107670987,LOC107713022,LOC107553030,LOC107699633,LOC107552148,LOC107714583 coding upstream 65402 2930254 ~ 2933505 (+)
cldn5a cldn5a,LOC107713023,LOC107552167,LOC107714561,LOC107553040,LOC107699651,LOC107670982 coding upstream 85170 2912692 ~ 2913737 (+)
adra1aa adra1aa,LOC107553034,LOC107699645,LOC107552152,LOC107713032,LOC107671010,LOC108430341 coding downstream 14367 3015349 ~ 3033899 (+)
lrrtm4l2 lrrtm4l2,LOC107714548,LOC107674311,LOC107696910,LOC107584861,LOC107713015 coding downstream 496442 3497424 ~ 3525944 (+)
vsig8b LOC107696914,LOC107713026,LOC107552198,LOC107714559,LOC107584864,LOC107674302 coding downstream 554616 3555598 ~ 3568917 (+)
LOC122350663 tas2r202,LOC107696909,LOC107713025,LOC107552176,LOC107584865,LOC107714564 coding downstream 574549 3575531 ~ 3576550 (+)
nefmb nefmb,LOC107714570,LOC107674305,LOC107751590,LOC107552168,LOC107751596,LOC107696904 coding downstream 647020 3648002 ~ 3652067 (+)
G60452 NA non-coding upstream 44913 2953016 ~ 2953994 (+)
G60369 NA non-coding upstream 364892 2632717 ~ 2634015 (+)
G60361 NA non-coding upstream 386680 2610317 ~ 2612227 (+)
LOC122351006 NA non-coding upstream 439859 2557030 ~ 2559048 (+)
G60347 NA non-coding upstream 474773 2520830 ~ 2524134 (+)
G60660 dpysl2a,LOC107552153,LOC107713031,LOC107671020,LOC108266046,LOC108430340,LOC107560268,LOC103154404 non-coding downstream 54445 3055427 ~ 3056019 (+)
G60661 NA non-coding downstream 55317 3056299 ~ 3057846 (+)
G60668 bnip3la,LOC107552154,LOC107714550,LOC107699644,LOC107560275,LOC107671016 non-coding downstream 75894 3076876 ~ 3080723 (+)
G60673 LOC107699615,LOC107552196 non-coding downstream 84774 3085756 ~ 3086373 (+)
G60718 NA non-coding downstream 568512 3569494 ~ 3570284 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 959071 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 962927 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 978873 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 1080536 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1780103 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 847632 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 923879 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1028321 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2103588 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2225970 5226952 ~ 5229608 (+)

Expression


Co-expression Network