cldn5a (cldn5a,LOC107713023,LOC107552167,LOC107714561,LOC107553040,LOC107699651,LOC107670982)


Basic Information

Item Value
gene id cldn5a
gene name cldn5a,LOC107713023,LOC107552167,LOC107714561,LOC107553040,LOC107699651,LOC107670982
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2912692 ~ 2913737 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247733.1
ACTCTTTAAGGAGAGGAACGCAGCCTTTCCAAACATCCCTCAACAGGTGCGCAGATCTATCCGAGGAATAAAAGAGATGGCCTCCGCGGCTCTGGAGATTCTGGGTCTGACCCTGTGCGTCTTCGGCACGCTCTTGGAGATGACCGCCTGCGGGCTGCCCACCTGGAAGGTGACCGCCTTCATCGAGGCCAACATAGTGGTGGCGCAGACCATCTGGGACGGCCTGTGGATGTCGTGCGCCGTGCAGAGCACCGGCCAGATGCAGTGCAAGATGCACGACTCCATGCTCGCGCTCACCCACGACCTCCAGGCCGCGCGCGCGCTCACGGTCATCTCGTCCGTCATGTGCGTCGTGGGGCTGATGGTGGTGATCGCCGGCGCGCAGTGCACCAACTGCATCAAGACGGAGAGCGTCAAGGCGCGCGTGGTGAACGTCGGAGGCGTCATCTACATCGTCAGCGCCGTCTTCGTGCTCGTGCCCCTGTGCTGGATGGCCAACAACATCATCTCCGACTTCTACAACCCTCAGGTTCCGGCGGCGCAGAAGCGCGAGATCGGCGCGGCGCTCTACATCGGCTGGGCGGCcaccgcgctgctgctgctcgGGGGAATCATGCTCTGCTGCTCGTGTCCCTCCTCGGGGAGCTCGGGCTACTCGGCCAAATACTCGCCCACCAAAAGAGCGGCATCCAACGGGGACTACGACAAGAGGAACTACGTTTAGGCGCTGCTCGGATTCACGGCGTGTTGATGTTTcgattctttctttctttctttttttttttaagcatcttGGACTACCGATTGGATccgttttttttgtatttgacgCGAAACTTTTAAGGATAGCTCCTGTGCGTTCCTGAAAGGTGGACGTTTTATAGTAACTTTCAAAACTAGTAGCACACATTACGCAATGCTTAACAGATCATCacaatcctttttttattttacaatgttcatattttaatgtgcattaacTACTGATCTGTTAAACATTATatcgtttatatatatatatatatatatatatatatatatatata

Function

symbol description
cldn5a Predicted to enable structural molecule activity. Acts upstream of or within Kupffer's vesicle development; determination of heart left/right asymmetry; and establishment of endothelial barrier. Located in apical junction complex. Is expressed in several structures, including central nervous system; hyaloid vessel; immature eye; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).

NR:

description
claudin-4-like

GO:

id name namespace
GO:0061028 establishment of endothelial barrier biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247733.1 True 1046 mRNA 0.53 1 2912692 2913737

Neighbor

gene id symbol gene type direction distance location
srrd srrd,LOC107699635,LOC107714588 coding upstream 86396 2824272 ~ 2826296 (+)
pptc7a pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC105891618,LOC108430358,LOC103044306 coding upstream 99552 2804285 ~ 2813140 (+)
myl2b myl2b,myl2,LOC107699636,LOC101071916,LOC103044021 coding upstream 110398 2795108 ~ 2802294 (+)
LOC122350791 LOC107715152,LOC100333880,LOC107699660 coding upstream 303116 2560353 ~ 2609576 (+)
rab35b rab35b,rab35,LOC107699662,LOC107671023,LOC108430363 coding upstream 393810 2510789 ~ 2518882 (+)
ufd1l ufd1l,LOC107670987,LOC107713022,LOC107553030,LOC107699633,LOC107552148,LOC107714583 coding downstream 16517 2930254 ~ 2933505 (+)
tmem127 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107714579,LOC106579884 coding downstream 25526 2939263 ~ 2943205 (+)
LOC122350330 LOC107553039,LOC107714575,LOC107670999,LOC107552195 coding downstream 29544 2943281 ~ 2947349 (+)
gatd3l es1,LOC107553036,LOC107671040,LOC107713034,LOC108430344 coding downstream 35253 2948990 ~ 2952684 (+)
adra1aa adra1aa,LOC107553034,LOC107699645,LOC107552152,LOC107713032,LOC107671010,LOC108430341 coding downstream 101612 3015349 ~ 3033899 (+)
G60369 NA non-coding upstream 278677 2632717 ~ 2634015 (+)
G60361 NA non-coding upstream 300465 2610317 ~ 2612227 (+)
LOC122351006 NA non-coding upstream 353644 2557030 ~ 2559048 (+)
G60347 NA non-coding upstream 388558 2520830 ~ 2524134 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding upstream 490475 2408095 ~ 2422217 (+)
G60452 NA non-coding downstream 39279 2953016 ~ 2953994 (+)
LOC122349907 NA non-coding downstream 85170 2998907 ~ 3000982 (+)
G60660 dpysl2a,LOC107552153,LOC107713031,LOC107671020,LOC108266046,LOC108430340,LOC107560268,LOC103154404 non-coding downstream 141690 3055427 ~ 3056019 (+)
G60661 NA non-coding downstream 142562 3056299 ~ 3057846 (+)
G60668 bnip3la,LOC107552154,LOC107714550,LOC107699644,LOC107560275,LOC107671016 non-coding downstream 163139 3076876 ~ 3080723 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 872856 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 876712 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 892658 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 994321 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1693888 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 934877 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1011124 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1115566 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2190833 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2313215 5226952 ~ 5229608 (+)

Expression


Co-expression Network