lrriq3 (LOC107585823,LOC107657910,LOC107710924)


Basic Information

Item Value
gene id lrriq3
gene name LOC107585823,LOC107657910,LOC107710924
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9006129 ~ 9009507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247009.1
AAAGCAGTAttcgttttatttgtaatgttttgtcaGTGGGtttcaagaaaatgtttttaagatgcTTCTTGTATTTCCAACCAACGTTGTCATAGCAACTTTTATCTTGGAATCATTGGGCCAACAAAAGAATACAGTTGAGAGCCAGGCGCAAAACCATGGTAAGAACAAACAAATGAGCAGATGGAGGATTTGAACAGTTcgtgaaatatgtaaatatatctaaatatgtaTTAGGAATGATACTATAATCATGAAATGCTGAGAGTGGATGTTGCCTCAAGATGTTTTTGtgatatgaaaaaatgtttccttCAAAAAATGGAAGAGTTGAATTTCACAAAGATGTGAAAATGGATTCCCTGGAGGGATACTGGGCATATTTGGTAAACTGCTCTCAGTCTCTGATACTGGATCATGGCTACTGGACATCAGAGAGCGAGAAAGACCCGAAGGACATTTTGATGGTCAGATTGAGCAGTCTGCTTTTAAAGAGTCTGGATCAGATTGGATCTTGCAGAGCGTTGAGAATTTGTATCTTAGCTGACAACTTTCTGACTAGGATCGAAGCTCTGATGGAATGCGCTCTGTTGGTGAAGTTAGATCTGAAAGGAAATCAgATTGTTCAGCTCCCTGATGCTTCATGTTGGAATAATCTGAAAGAATTGCAACTTCTGTATCTACACGACAACAACATGTCAACCTGGAACAGTATTAAAGGCCTGTCTGGCTGTTTAAAACTGACTGCTTTAACTCTCTATGACACCCCGCTCAGTTTAAAGAAGAGCTACAGGCACTGTCTGGTCAACAGCATATGGTCATTGAAGGCCTTGGACAACTTTGTCATCTCTGATGAGGAAATCGTACAAAACTTGTCTCTTCCTGTTCGATTCAAAGCAATGAATCAGCACTTTTGTGTCAGTTTGTATCCATGTACAAAGTCGgaTTCATTCGAGATAGAGATGAAAGTGGCATATAAAATAATCTCTGAGATAAACAGAATTCAGGCCTTTTATTCCCCTACACTTATTATACAGCGCTGGATTCGAGGccatttaattagaaaaagaCTTGGGCTTTGCAGTACAAAGAAACAGATCAAGTCTGAGAAACCATTCATTTCCATGCCTTTGAGCACAGAAAATTACCAGGTACAATCCCAGTCTCGGAAAACCATGGAGGATGCCACAGATGACCACCCTGAACAACCAAatgaaaaagaagagagagacacagagatcCAAAGAATTAATGTGAACCTTGCCAAGCTAATGCAAACTGGCAACCCAGAGGTTTTACAGGATCCTGCAAATGTTAAATCAAATGACAGTCAACAAGACATAAAAACACCATGCAACACCCCTCAGTGCAGTCGAAGTCTGAAATCTGAGGCCTATTTAAACATAATTGACCAAGGCATCAATGTGACTGTTGATCTCTGTAATGATGAAACTGAAGAAGGAACCTTTCGTGTTTTGGGACTAAAAGCTTTGGTCCACCAGAGTGAGCCAGTAAGTGACATGCTGCTTTCCCATAAAGCTGCAGGGCAGGACGTCCGTGAGGCCATCAGCCAGTTTCATACTCAGAGACCAGGTCTACCACCGCACTCTTCTGCAGTTACTTCAGGAAAGCGTCCGATTGGTTGTTGCCATGACAAAATCAGCCTCACCCCCTTTAAAGTCATTGAAAGAGTCCATCAAGCATTTGATAAAGCCAGAATCCAGAAACACCTTGCAGAGAAGGTAACTGAGTGCCAGATCGACCGTGAAGTAGTCAAGGGTCGCCGAGACATCTTTAGAGAAGCTCGCAGGACAGAAGTGCGTTTGCGGCAGGAGCGGGAAAGGATGGATATGGAGAAAACTCTTACTCTGCAGAGAGCCAAGATGGAGCAGGACATCCATCACGCACGTCAGAAACATGCCCAGTTTTTGGAGGAGAAGAAGATGAGAATCCAGGAACAAGAGATGGTTTGCAGTTTCAGCCAACAGCACAACTCTCTAGCGAGGGCCGTGCTTAGATACCACACATGGCAACGTGGTAACCAgcaatgaatgtttttaaacaaacataacatttagATATTGGTTAGTCAGACCCTTTGCGTGCAGcagcttcaaaacatttattgcactATAGTATAGAATAgtataatacattacaatacTTACCAGAAGATGCCTGCAATGATTTTATTATAGACACTGAGATCTGCTCCtcttttcaaaatttaaaatattacataacagGAATCCAAAAATACACCCCTAATACACAACCACCCCCATCCGTCAGGCGCAAGTATTAAA

Function

NR:

description
leucine-rich repeat and IQ domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247009.1 True 2306 mRNA 0.41 7 9006129 9009507

Neighbor

gene id symbol gene type direction distance location
LOC122350485 NA coding upstream 14921 8987654 ~ 8991208 (+)
erich3 erich3,LOC107710922,LOC107599815,LOC107657850,LOC107550342,LOC107699814 coding upstream 18575 8979376 ~ 8987554 (+)
slc44a5b slc44a5,slc44a5b,LOC107657906,LOC107548439 coding upstream 33354 8942393 ~ 8972775 (+)
si:ch211-150o23.3 LOC107657905,LOC107710920,LOC107599813,LOC107743855,LOC107699767 coding upstream 87423 8913462 ~ 8918706 (+)
si:ch73-70k4.1 NA coding upstream 185867 8814073 ~ 8820262 (+)
ssbp3b ssbp3b,LOC107657912,LOC107710925,LOC107585824,LOC107699856,LOC108439398 coding downstream 9246 9018753 ~ 9029083 (+)
LOC122350046 LOC107657916,LOC107585827,LOC107699878,LOC100333406,LOC107710926 coding downstream 30092 9039599 ~ 9109833 (+)
alkal1 fam150a,LOC107750531,LOC107548541,LOC107699942,LOC107657934 coding downstream 229624 9239131 ~ 9250522 (+)
tab3 tab3,LOC107657918,LOC107699984,LOC107750565,LOC107717572 coding downstream 268338 9277845 ~ 9284793 (+)
prrg1 prrg1,LOC107585847,LOC107657931,LOC107700656,LOC107750596,LOC107717574 coding downstream 284880 9294387 ~ 9299803 (+)
G62216 NA non-coding upstream 31460 8974398 ~ 8974669 (+)
G62215 NA non-coding upstream 31784 8974097 ~ 8974345 (+)
G62106 NA non-coding upstream 353562 8587680 ~ 8652567 (+)
G62045 LOC107599802,LOC107657894,LOC107743884,LOC107548279,LOC107699654 non-coding upstream 535293 8469057 ~ 8470836 (+)
G62064 NA non-coding upstream 539033 8465249 ~ 8467096 (+)
G62231 dio1,LOC107700640 non-coding downstream 23012 9032519 ~ 9037868 (+)
G62314 obscna,LOC107657853,LOC107758262,LOC107585905 non-coding downstream 180548 9190055 ~ 9191320 (+)
G62381 NA non-coding downstream 253420 9262927 ~ 9264290 (+)
G62399 NA non-coding downstream 316572 9326079 ~ 9327293 (+)
G62401 NA non-coding downstream 344087 9353594 ~ 9359274 (+)
smim15 smim15,LOC107700545 other upstream 527798 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 1477043 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 2156418 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 2239586 6756105 ~ 6766543 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other upstream 3776521 5226952 ~ 5229608 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 694974 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 1339407 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 1422295 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 1526636 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 2183217 11192724 ~ 11197803 (+)

Expression


Co-expression Network