G62231 (dio1,LOC107700640)


Basic Information

Item Value
gene id G62231
gene name dio1,LOC107700640
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9032519 ~ 9037868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92153
TTTAGACAATACAAAACGCTGGAAatcaaaaatgcaacaaaagcaaaagaacaGACCCAAGCGACTACAAAACCCTTTCAgctcattccaaacctttcaCCTCTATAAACACGTGAAATCTCTTACTACAAGAGGAAAAGTGTGTGTAAAAGCCTCTGGCCaaggttaaaatgtaaaagctcTCACGAGAGCAGTTCTGAAGCTTTGGAGGCATTTCCTGTACTTGTGTGTAGTTCGTCTACATTACAGAACGCTCACCTGATAGATAACTTTCCCGCTCTGAATGACATAGAGGCGCTCAGGCAGGGCTCCGTATTTGCTGGCAGTGATGTTGCTCATCTCATCCACTACCACGGGGCAAAGGGGGTCTTCTTTGGCCAGGGTCCGGGCCGCAGCCAGTCTCTCCTCCAAGTTTTTGTGCACGCTGATGTCGACGTTGTTTGCAAAAGACCAAGCATCTGCAAAGAACAGAAGAATTTTACAAGTTATTTAACATATAACTCTAGCTTCCAAAACTCAGAGACGGTGGATGTTTCCCTGTGAAGAAGACTGCATCAGTAACAGTGTTGGGTGTAATGCATTACGTACCGAGTACTTACGGTAATTTAAATAAGGG
>TU92160
CTTTGACAAAACGATGAACGCTCGTTTTCTGTCCGTCCAGGGTGAATAAAGCTGTGTCCGGAGCCGCGTGCCCCTCAAACGCCTCCAGGCCCAGCGAGCACCAGTTCACGGAGAGCACGGTTTTAATGAACGCCAGAGAAAAGAAAGTCGGACCCCAGTCTTCGTATCTGAATTTGGGATTTTGAGTCATCGTCGACTTCTCTCCCATTTTCAGATGGATTTTCATCATCAGTCCCGGGGAAACGAACGACAGGAGCTTCAACAGGATCATCTGCGCGATCGCTAATAATACCATGACCACAGCCGATACATAAACGTAAAGTTTTTTAAACGCATATCCCACTGTGGTCCCCATCGCGAGGAGATTTGATCGGTCCACGCGTCTTGGCGCGAGCGCTACGCGAACGACGCAGACATCAAACTTTGCTCGTGTTGTTTCCCGGGGAAACGAACGACAGGAGCTTCAACAGGATCATCTGCGCGATCGCTAATAATACCATGACCACAGCCGATACATAAACGTAAAGTTTTTTAAACGCATATCCCACTGTGGTCCCCATCGCGAGGAGATTTGATCGGTCCACGCGTCTTGGCGCGAGCGCTACGCGAACGACGCAGACATCAAACTTTGCTCGTGTTGTTGTAGCGGAGCCGTACCGCCCTCCACACGTTACATCACGCCAAAATTCAAGACCAGAGCTCACGTGGGCGAAGGCTttgcttattattaattatgtcgCATCGGTGTTGCTTGGTAACCTTTCTGGAGACTAATTTTCATAAGCCTTTA

Function

symbol description
dio1 Predicted to enable thyroxine 5'-deiodinase activity. Acts upstream of or within regulation of neural retina development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; female organism; heart; liver; and male organism. Orthologous to human DIO1 (iodothyronine deiodinase 1).

NR:

description
PREDICTED: type I iodothyronine deiodinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92153 False 616 lncRNA 0.44 2 9034162 9037868
TU92160 True 790 lncRNA 0.50 2 9032519 9035747

Neighbor

gene id symbol gene type direction distance location
ssbp3b ssbp3b,LOC107657912,LOC107710925,LOC107585824,LOC107699856,LOC108439398 coding upstream 3436 9018753 ~ 9029083 (+)
lrriq3 LOC107585823,LOC107657910,LOC107710924 coding upstream 23012 9006129 ~ 9009507 (+)
LOC122350485 NA coding upstream 41311 8987654 ~ 8991208 (+)
erich3 erich3,LOC107710922,LOC107599815,LOC107657850,LOC107550342,LOC107699814 coding upstream 44965 8979376 ~ 8987554 (+)
slc44a5b slc44a5,slc44a5b,LOC107657906,LOC107548439 coding upstream 59744 8942393 ~ 8972775 (+)
LOC122350046 LOC107657916,LOC107585827,LOC107699878,LOC100333406,LOC107710926 coding downstream 1731 9039599 ~ 9109833 (+)
alkal1 fam150a,LOC107750531,LOC107548541,LOC107699942,LOC107657934 coding downstream 201263 9239131 ~ 9250522 (+)
tab3 tab3,LOC107657918,LOC107699984,LOC107750565,LOC107717572 coding downstream 239977 9277845 ~ 9284793 (+)
prrg1 prrg1,LOC107585847,LOC107657931,LOC107700656,LOC107750596,LOC107717574 coding downstream 256519 9294387 ~ 9299803 (+)
ccdc181 si:ch211-232d19.4,LOC107717568,LOC107657920,LOC107585925,LOC107751078,LOC107700684,LOC107549898 coding downstream 267837 9305705 ~ 9311270 (+)
G62216 NA non-coding upstream 57850 8974398 ~ 8974669 (+)
G62215 NA non-coding upstream 58174 8974097 ~ 8974345 (+)
G62106 NA non-coding upstream 379952 8587680 ~ 8652567 (+)
G62046 ndufaf2,LOC107743894,LOC107657848,LOC107752447 non-coding upstream 552831 8449053 ~ 8479688 (+)
G62314 obscna,LOC107657853,LOC107758262,LOC107585905 non-coding downstream 152187 9190055 ~ 9191320 (+)
G62381 NA non-coding downstream 225059 9262927 ~ 9264290 (+)
G62399 NA non-coding downstream 288211 9326079 ~ 9327293 (+)
G62401 NA non-coding downstream 315726 9353594 ~ 9359274 (+)
G62414 LOC107548667,LOC107657922,LOC107750669,LOC107585851 non-coding downstream 321549 9359417 ~ 9360034 (+)
smim15 smim15,LOC107700545 other upstream 554188 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 1503433 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 2182808 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 2265976 6756105 ~ 6766543 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other upstream 3802911 5226952 ~ 5229608 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 666613 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 1311046 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 1393934 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 1498275 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 2154856 11192724 ~ 11197803 (+)

Expression


Co-expression Network