fsd1 (fsd1,LOC107657921,LOC107717569,LOC107585848,LOC107750605,LOC107700007,LOC107548631)


Basic Information

Item Value
gene id fsd1
gene name fsd1,LOC107657921,LOC107717569,LOC107585848,LOC107750605,LOC107700007,LOC107548631
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9311518 ~ 9321215 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247588.1
CGCTAATGAGTTGTTGAGGGATGCAATGCTCCATAGCAACATCAGTACCAGCGGAGGAGCGCTGTAGCGGACGATCTGGGATAAATACCCTGCGAATATCTGAAACAGGTGCTGCATGTGGACAGCATGGACGACCAGAAGGAGTCACTGAGGAAGATTATCACTACGTTGGCTCTGAAGAATGAGGAAATTCAGAATTTCATCTGCTGTCTAAAGCAGAGTCTAGAGAACCTAGAGGCGAATTCAAACCGAGTGCAGGAGGACCTGGAGTCAGAGTTTAGCTCTCTGCATGCTGTCCTGGATGAACTGAAAGAGGGCATGGTCACACGGATCAAGCAGGAAAGAGCCGGTCGCACATATGAGCTACAGagtcaGCTGAGTGCATGCACCAAAGCCCTAGAGAGCTCAGAGGAGCTGCTGGAATTAGCCAATCAGACACTCTGCTCATCTGAGAACGACAACTTCACTCAGGCGGCCAAAGAGATAAAGGATAGTGTGACTATGGCTCCAGCATTTCGTCTCTCTCTGAAAGCAAAGGCCAGTGACAGTATGAATCACATGATGGTGGACTTCACTCAGGAAAGAAATATGTTACAGGCCatcaaatttcttccagTGCCTGCCACACCAGAAATTCACATGGCTGAATGCCAGGTGTTTGATAACACAGTCACATTGGTGTGGACCTTACCTGAACCCGACTCCAAACTCGACCACTACATCCTAGAATATCGGAGAACCAATCATGACGGTCCTCCTCGGGCTCGAGAAGACTACCCCTGGATGGTGGTGGAAGGGATAAAAGAGACTGAGTACACACTCATGGGTCTTCGGTTTGACACGCGTTACATGACCTTTAGAGTAAAGGCATGCAATAAAGCGGTGGCGGGTGAATTCTCAGAGCCGGTTACTCTAGAAACACATGCATTCGTCTTTAAACTGGATTCAGGTTCAGCCCATCAGAACCTGAAGGTAGAGGATCTCAGTGTGGAATGGGACAGCAGCGGTGGGAAGGTAGCTGTCCAGGACATCCGTAAGGAAAAGAACAGGACCAGCTCTCCTATGCATTCTCCTGCCAGGACAGCCATGATGTCTCCCAAAAGAGCTCCATCTGCTAGAGTGGGCCGAGACCGCTTCACAGCAGAGTCTTACACTGTTTTGGGAGACACCATGATTGATGCAGGGCAGTATTACTGGGAGGTACGCTTTGATAAGGAGAGTAAGACGTTCGCAGCAGGAGTTGCCTTGCGGTCTCTAGGTCGCTTTGATCAGCTGGGGAAGAGTAACGCTTCCTGGTGCATCCACCTCAACAACTGGCTTCAGCAGAACCTCACAGCCAAGCACAACAATAAAGCCAGAACACTGGACTGCCCCATTCCCGACCGCATCGGGATTTACTGCAACTACGAAGAAGGCACATTGTCTTTTTACAACTCCAGAACCAAAACTCTCCTTCATACATTCAGAACCAAGTTCCAGCAGCCTGTTATACCAGCCTTTATGGTGTGGAATGGGAGTTTCTCAGTGCAGACAGGCCTTCAGGTTCCCAGCATCGTGCTGAGCGGTCAGAAGAGAAACAGTAACACAAGCAGCTCCAATGCCAGCCTTACTTAAATCACACTTCACTCTAGAACTGCTACACATACGCACAGGTTTGAAGAACACCTGGAAACCCTTACACAAGCCTGGAGGCTCTTCCTATCATCGGTATGTCTTGCCAGCTCAAGAGGAGGGCTGCTCTAGATTGCTTTCCTCATTTCTTTCATCTCACTGATCCGGATCCTGTGCCTTTCAGTGTCCTGTATTCAGACATGATGGGGTATTACTCTGTTTCAACATGCAAAGAGCTTTAATAGCCTTCAGTTCATGTGTATATCACTAGGGCCAAAAGtcgtgttgttgttttttgttagcATTTGTTCATTCATAGTTCACAGTATTTGAGCCACATTTGAACAGTTATTTCAATGCAACAGCAGCATGTTGGTGTTATTGGTTGAAATCTCAGACGaaactgtattatatttacACACTGAATGTCTTTATATGCCTCGAATTCTGCTACAGTAGCTGCTTCCGTATACTTTTTAAACTTACAGTTAGTATCAGAGTAGCACAATAATCTTAAGCTAAATCATAGAAGTCAAATGCCTTTTATAGAATGTATTAATTCTGCAGTTCCAGCATCTAAGGAGGAAGGAGGCAGGTTTAACAAACCATTTGTTTTTGCACGATTGTTTGGTTGACgtatttgtgagtgtgtgtgtgtgtgtgtgtgtgtgagaaagtgttCATGTCACCCAGAAACATACTTTTCAGTGTTCTTGATGCAAATATTTACCAAACGTTTTTTGTACACCTGCTTACATATTACTGAAGACAGTAATATTTCTGCTACATCGCTGTCCTCTGAAAtgcatagttcacccagaaataaaaCTTCTGTATTCTCATCTGTTTTAACAAAACTGTATGACTGTTTCGGTGGTACGCAAAATAGATTCGAATAATACTGGAGCTTTCAAGTTtaataaaagacataaaagcATGTAAATTGTCAAACATAGGCCCTATATTCCATAGTTTCTGAATCATTCGGTCGTTTTTAAGCCAATAGATATCAATAATCATTGCTTACGGTGAACTGTTAGTCTTATTAAAAGGCTGAATTGGATTTAATGATTCATTAGAagagtcaactaaaatatttattgatgaataaatataatttcagacTCTTTATTGCATAATGCAATCAAATGCCTTCAAATGTAATGAACAAGactgtttttatgcttttgaatccTTTGTGAAGCTTGAAAGCTTCACATGCTACATTAGAAAAGGTCATACagctttagaacaacatgagcgTGTGTAATTAATGAAAGAAGTGTTAACAATCTGCGATGCTTTTAGTCAAACACCCgaacattttaaacatgtctGAAAACTAAAATCAACCTGTAAAATCGTGCTGTTAAACTACCTGTTAcgtcaataaaacaaatgccaAACATA

Function

symbol description
fsd1 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 1

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K24489 FSD1; fibronectin type III and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247588.1 True 3021 mRNA 0.43 13 9311518 9321215

Neighbor

gene id symbol gene type direction distance location
ccdc181 si:ch211-232d19.4,LOC107717568,LOC107657920,LOC107585925,LOC107751078,LOC107700684,LOC107549898 coding upstream 248 9305705 ~ 9311270 (+)
prrg1 prrg1,LOC107585847,LOC107657931,LOC107700656,LOC107750596,LOC107717574 coding upstream 11715 9294387 ~ 9299803 (+)
tab3 tab3,LOC107657918,LOC107699984,LOC107750565,LOC107717572 coding upstream 26725 9277845 ~ 9284793 (+)
alkal1 fam150a,LOC107750531,LOC107548541,LOC107699942,LOC107657934 coding upstream 60996 9239131 ~ 9250522 (+)
LOC122350046 LOC107657916,LOC107585827,LOC107699878,LOC100333406,LOC107710926 coding upstream 201685 9039599 ~ 9109833 (+)
mpnd mpnd,LOC107717566,LOC107750615,LOC106591182 coding downstream 9110 9330325 ~ 9335661 (+)
mpeg1.2 mpeg1.2,LOC107585926,LOC107676957,LOC107657857,LOC107717542 coding downstream 236096 9557311 ~ 9561284 (+)
npl npl,LOC107676614,LOC107717554,LOC107750814,LOC107700206,LOC107548793 coding downstream 297954 9619169 ~ 9624330 (+)
sec22bb sec22bb,sec22b,LOC107548814,LOC107676649,LOC107750823,LOC107585928,LOC108439390,LOC107700221 coding downstream 303726 9624941 ~ 9629188 (+)
si:ch73-281k2.5 LOC107585863,LOC107717553,LOC107548805,LOC107585864,LOC107695243,LOC107750854 coding downstream 312094 9633309 ~ 9647010 (+)
G62381 NA non-coding upstream 47228 9262927 ~ 9264290 (+)
G62314 obscna,LOC107657853,LOC107758262,LOC107585905 non-coding upstream 120198 9190055 ~ 9191320 (+)
G62231 dio1,LOC107700640 non-coding upstream 273650 9032519 ~ 9037868 (+)
G62216 NA non-coding upstream 336849 8974398 ~ 8974669 (+)
G62215 NA non-coding upstream 337173 8974097 ~ 8974345 (+)
G62399 NA non-coding downstream 4864 9326079 ~ 9327293 (+)
G62401 NA non-coding downstream 32379 9353594 ~ 9359274 (+)
G62414 LOC107548667,LOC107657922,LOC107750669,LOC107585851 non-coding downstream 38202 9359417 ~ 9360034 (+)
G62426 NA non-coding downstream 174345 9495560 ~ 9522084 (+)
G62445 NA non-coding downstream 210489 9531704 ~ 9532337 (+)
smim15 smim15,LOC107700545 other upstream 833187 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 1782432 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 2461807 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 2544975 6756105 ~ 6766543 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other upstream 4081910 5226952 ~ 5229608 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 383266 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 1027699 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 1110587 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 1214928 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 1871509 11192724 ~ 11197803 (+)

Expression


Co-expression Network