mrpl55 (LOC107657860,LOC107707588,LOC107757989,LOC107699412,LOC107580195,LOC107549705)


Basic Information

Item Value
gene id mrpl55
gene name LOC107657860,LOC107707588,LOC107757989,LOC107699412,LOC107580195,LOC107549705
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7659030 ~ 7660199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247651.1
GGAGCATTTTATACTGATACACATCCATGCCGTTTGTTGATGTGACCTTCTCCATTCTGAAGTGTATTGCTACTGTCTTGTTATgcttatgaatatatttactaCGTAGCCGTTTCCAGTGTTGCAAATTGTATGGCCATGGCTTTAAACATGCTTGGCCAGCCTTGCAAAAGTATATTTAGGTGTCTTCAGACCGTTTTCACTCACAGGTGCTTGCAAGCCACATCCTCATTTCACACCACAGTCTTTCAGTCAGACTCCAACAGAACCTGTGTGGTCCGCTTTGGGAGGCAGAAGTATGAGAGGATGTATCCTATTCTGTTGGTGAGACCTGATGGATCCACCATCAACATCAGATACAAAGAGCCCAGAAGAATAATGAAGATGCCTGTGGACATCACCACCATGTCTGAGGAGGAGAGGAAAATCAGGATGCGGAAAAAGCTACCGAAGAGGGCAGCGAAACAGAAAATGGATGATTTTGAGGATGATTTCAAAGTTGATGATTACAGCaaattctgggaaaaaaaataaatggactgATGCACTTAAATGCTTAATTGAGAGTATTTATGTTGTCTCACATGTAAAatattgtgattttgttttatatgttacCCAGCAATTAAAAAGCCTTGAAATGTT

Function

NR:

description
39S ribosomal protein L55, mitochondrial

GO: NA

KEGG:

id description
K17436 MRPL55; large subunit ribosomal protein L55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247651.1 True 645 mRNA 0.40 3 7659030 7660199

Neighbor

gene id symbol gene type direction distance location
paox1 LOC107707587,LOC107758000,LOC107699439,LOC107603235 coding upstream 374 7655680 ~ 7658656 (+)
fnbp1l fnbp1l,LOC107707572,LOC107599010,LOC107757999 coding upstream 64679 7554832 ~ 7594351 (+)
abl2 abl2,LOC107758002,LOC107699422,LOC107657876,LOC107599009,LOC107707589,LOC107603207 coding upstream 105105 7529706 ~ 7553925 (+)
LOC122350878 LOC107757981,LOC107599044,LOC107757980,LOC107700337 coding upstream 142426 7512712 ~ 7516604 (+)
LOC122350882 NA coding upstream 148369 7508814 ~ 7510661 (+)
slc5a9 slc5a9,LOC107757988,LOC107707571 coding downstream 348 7660547 ~ 7666789 (+)
gclm gclm,LOC107599012,LOC107657862,LOC107757997,LOC107699464,LOC107603255 coding downstream 6894 7667093 ~ 7671807 (+)
dnttip2 LOC107707582,LOC107599013,LOC107657880,LOC107700367,LOC107603264 coding downstream 11839 7672038 ~ 7677356 (+)
LOC122350682 col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605 coding downstream 360025 8020224 ~ 8028389 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC107657884,LOC103028496 coding downstream 482675 8142874 ~ 8216882 (+)
G61902 LOC107707585,LOC107757998,LOC107599011 non-coding upstream 55008 7600743 ~ 7604022 (+)
LOC122350889 NA non-coding upstream 146594 7511553 ~ 7512436 (+)
G61841 LOC107700326 non-coding upstream 146602 7511083 ~ 7512428 (+)
LOC122350892 NA non-coding upstream 147496 7511034 ~ 7511534 (+)
LOC122350887 NA non-coding upstream 157543 7497374 ~ 7501487 (+)
G61916 NA non-coding downstream 89509 7749708 ~ 7756124 (+)
LOC122350903 NA non-coding downstream 615376 8275575 ~ 8280335 (+)
G62002 NA non-coding downstream 623561 8283760 ~ 8283984 (+)
LOC122350828 NA non-coding downstream 691832 8352031 ~ 8354451 (+)
G62021 NA non-coding downstream 701878 8362077 ~ 8371721 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 129944 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 809319 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 892487 6756105 ~ 6766543 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other upstream 2394664 5104570 ~ 5264366 (+)
smim15 smim15,LOC107700545 other downstream 816972 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 2044282 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 2688715 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 2771603 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 2875944 10536143 ~ 10551791 (+)

Expression


Co-expression Network