LOC122350682 (col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605)


Basic Information

Item Value
gene id LOC122350682
gene name col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8020224 ~ 8028389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247359.1
gtgCACAAAGAACTGATGAATTATGATTTGTCCGCAAAACATTTATACCATGTAGTGGAGAAACACctaaagatttttcttttcttattagGTGAACCGGGCCTACAGGGTCCACCAGGTCAACCTGGGGAGAAAGGCGAAGCAGGGGTAGATGGCATTCCTGGATTTgtaggagagagaggagaaccTGGTATACCTGGCACAGGTTTTCCAGGATCCCGTGGAGAAGCTGGCAGCAAAGGTGACAAGGGTAACCCTGGTCTTCCTGGCATTAACGGGAGTCCAGGCATTCCTGGAATCAAAGGTGAGAAGGGTCTGCCTGGATTCCCAGGGGACCAAGGGCATCCAGGAGAGAGAGGACTTCCAGGAATATCTATGGAGGGACCTAAAGGGGACCAGGGAGCTCAGGGACAACAAGGACAAAAAGGTGTGATTGGTGACCCAGGCCCACCTGGTATACCTGGCAGTGCTGGAGCTAAAGGAGAAAAGGGAGATGTGGGCTTCCCTGGCCCACAAGGCTCTCAAGGATATAAAGGAGATAAAGGTTTCACTGGTGCCTCTGGTGAGCCTGGATTGCCTGGCTATAATGGACCAAAGGGTGAGATGGGACCACAGGGTGTTCCTGGGTTCCCTGGTACAAAGGGTGAGCATGGAGTAATTGGTCCTAAGGGTGACGGAGGTGACAGAGGATTCCCAGGTCTTAAAGGTACTGAAGGCCCCCCTGGACCACCTGGGCCTCCCACATTTATAAAGGGAGATCCTGGTCCTCCAGGACCTCAGGGTCCCCAAGGGCTGATCGGAATTCAAGGCTACCCTGGACAGAAAGGACAACAGGGTGTGATGGGACTTCAGGGTTTAAAAGGATCCGATGGAACACCTGGCTATAATGGACACCCTGGGGCCAAAGGAGAGCCCGGACAAACCGGACCTTCTGGCCCCAGAGGGTACCCTGGACCTCCAGGACCTAGTGGTTTCCCTGGTGGCATCGGCCCTCCTGGCCCTGCATCAATGGACCACGGCTTCCTTGTAACACGCCACAGTCAGAGTATCGATATTCCAGTATGTCCAGCAGGAACAACGCCGATCTATGATGGATATTCACTGCTTTATGTACAAGGCAACGAGAGGTCACATGGACAAGACCTAGGCACAGCTGGTAGCTGCCTAAGGAAGTTCAGCCCAATGCCTTTCCTCTTCTGCAACATCAACAATGTATGTAACTTCGCTTCTCGTAATGACTATTCCTACTGGCTTACCTCTCCCGAGCCAATGCCCATGAGCATGGCCCCTGTTACCGGTGAGAGCATCAAACCCTTTATCAGCAGATGTGCAGTTTGTGAGGCTCCTGCAATGGTGATAGCTGTGCACAGTCAGACCATACTGATCCCACCCTGTCCTCGTGGGTGGGATTCTCTCTGGATTGGATACTCTTTCGTCATGcacGGATGGCACCGGCTCTTCTCTGCCTCTACTGCATGCTGGGAGTTCCCAGCAGCACATCTGCTGAGAGTGCCACAGAGCTCTCCATATTCACAGAACCCAGAACGCCAGAAGCTCAGTGACACTCCACTGCGCTGCGCATGCCGTTTATGCCGGCAGAAAGAAGCTGCTTTACACCCTCCGCTCTATCAGGCTAACAAATAA

Function

symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(IV) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247359.1 True 1644 mRNA 0.53 12 8020224 8028389

Neighbor

gene id symbol gene type direction distance location
LOC122350865 NA coding upstream 687 7505741 ~ 8019537 (+)
dnttip2 LOC107707582,LOC107599013,LOC107657880,LOC107700367,LOC107603264 coding upstream 342868 7672038 ~ 7677356 (+)
gclm gclm,LOC107599012,LOC107657862,LOC107757997,LOC107699464,LOC107603255 coding upstream 348417 7667093 ~ 7671807 (+)
slc5a9 slc5a9,LOC107757988,LOC107707571 coding upstream 353435 7660547 ~ 7666789 (+)
mrpl55 LOC107657860,LOC107707588,LOC107757989,LOC107699412,LOC107580195,LOC107549705 coding upstream 360025 7659030 ~ 7660199 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC107657884,LOC103028496 coding downstream 114485 8142874 ~ 8216882 (+)
cdkn2c cdkn2c,LOC107699560,LOC107743873,LOC107707576,LOC107548184,LOC107599829,LOC107657864,LOC107550257 coding downstream 318894 8347283 ~ 8351468 (+)
si:ch211-198n5.11 si:ch211-198n5.11,LOC107657892,LOC107752441,LOC107599801,LOC108265604,LOC107700393 coding downstream 428845 8457234 ~ 8463215 (+)
ercc8 ercc8,LOC107752444,LOC107599804,LOC107743893 coding downstream 451908 8480297 ~ 8488530 (+)
elovl7a elovl7,LOC107657867,LOC107752445,LOC107743866,LOC107599803,LOC107699661 coding downstream 460535 8488924 ~ 8494454 (+)
G61916 NA non-coding upstream 264100 7749708 ~ 7756124 (+)
G61902 LOC107707585,LOC107757998,LOC107599011 non-coding upstream 416202 7600743 ~ 7604022 (+)
LOC122350889 NA non-coding upstream 507788 7511553 ~ 7512436 (+)
G61841 LOC107700326 non-coding upstream 507796 7511083 ~ 7512428 (+)
LOC122350892 NA non-coding upstream 508690 7511034 ~ 7511534 (+)
LOC122350903 NA non-coding downstream 247186 8275575 ~ 8280335 (+)
G62002 NA non-coding downstream 255371 8283760 ~ 8283984 (+)
LOC122350828 NA non-coding downstream 323642 8352031 ~ 8354451 (+)
G62021 NA non-coding downstream 333688 8362077 ~ 8371721 (+)
G62013 NA non-coding downstream 363989 8392378 ~ 8394743 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 491138 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 1170513 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 1253681 6756105 ~ 6766543 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other upstream 2755858 5104570 ~ 5264366 (+)
smim15 smim15,LOC107700545 other downstream 448782 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 1676092 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 2320525 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 2403413 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 2507754 10536143 ~ 10551791 (+)

Expression


Co-expression Network