si:ch211-198n5.11 (si:ch211-198n5.11,LOC107657892,LOC107752441,LOC107599801,LOC108265604,LOC107700393)


Basic Information

Item Value
gene id si:ch211-198n5.11
gene name si:ch211-198n5.11,LOC107657892,LOC107752441,LOC107599801,LOC108265604,LOC107700393
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8457234 ~ 8463215 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247876.1
CAGTTAACGTGTATCGTATTTCATGTAATGCTGGATGCTTTATggaatattgtttatttttcagttttctttacTATAATAGCCTCGCCTTGAATGATAGAATAgaattaaaacataatgtatCGGAATAGCTTATGATGAATTCTACCAAGTCAAGTTTGCGCCATAGACACTAACTTACTGATCTATACTGCACTCTAGTGGTCATTATACACGTATGCGTAATATATACGTTATACATATCAAACGTTCCTTTCTGCTTGTTTCCTTCCAGACGTCGTTTTTCGTTACActagaaaacattcaataatTTTATCCATTTGCCTCTCGCCTCGTCATGTACTGTAGTGTCTTAAGgtctttgcatttaaaaggGAATAATGTCATTCAGCTCACCAGAGCATCATTCTCTCAAAATTCACAGTCATGGGACACTACATCCAAGCTTTCCGGCTGCACCGCATACCACTGCACACCTTCACCTGCTTCAGGCAGTCTGTGGCAACCCTTGACAAATAGGACACACCAGCCATCAGCATCGTCCCGCTGTATGAGCTCCACTGTACGCAGGAGACGCCTGCCAAGTGCCTTTCCAATTATAGATGGAGAATTTCATCCAGCTCACAGACATGTGTATGAAGCCAATCTGAGGAACAGCCTAATCTGTCAGCAAAAATACCTTGAGCACAAGGAAAAAGTAATGAAGGGGGGTGGTGAAAATGCCATAGCACGGCATACGCAGAAGAATCGAAAGGTCCTCGTACGAGACAGACTCCGCATGCTGCTGGATGATGAAGATTATTTAGAACTTTCTCCTTTTGCTGGTCTTGGTCTGCCCTATGGAGACATCCCATCAGCAGGCTGTCTCTCAGGAATCGGTAAGATTAATGGACTTTGGTGCATGTTTGTTGCTAATGACGCCACGGTAAAAGGTGGCACAGCGTATCCCATCTCAGTTAAAAAGCAACTCAGGGCACAGTTTGTGGCCAAGCAGAATCGTTTGCCCTCTGTTTACTTGGTGGACAGTGGTGGCGCATTTCTCCCTCTTCAGTCAGATATCTTTCCTGATAAAAACCATGGAGGTCGCACCTTTTACAATGAAGCAGTTATGTCAGCAATGAAGATTCCTCAGGTTGCAATAGTGTGTGGCTCATGCACAGCTGGTGGCGCTTATACACCCACTATGTCTGAGGAGGCGGTGATTGTCCACCGGATAGGAACACTGTATTTGGGGGGTCCGCCGCTGGTGAAAGCTGCAACCGGAGAGGATGTTTCCCCAGAGGACCTGGGAGGAGCAAGGCTGCACTCAGAAGTGAGCGGCTGTATGGACCATTTTGCTGCAGCAGAAAATGAGGCATATGAAAATACCAGAAACATCATCTCCACCCTAAATTATGAGCTCCCAGAGGAGGACAGCACTTCGGTTGAGGAGCCCCTGTACAACGTGGACGATCTCATGGGCCTTGCACCTCGTTGCTACAATCACAGCATGGATGTCAGACTGATTGTGAGTCGACTGATCGATGGTAGTCGGTTTCAGGAGTTCAAAGCCCGTTACGGCACCCCTCTCCTCACTGGGTTTGCCAAAATTGAAGGtcatttagttgGAATCGTGGCAAATAACGGAGAGCTGACATATGAAGCTTCCCTGAAAGGCAGTCATTTTGTTCAGCTGTGTGATCAGAGGGACATTCCTCTCATCTTCCTGCAAAACACGGCACCAGAACCTGCACACACTTTCTCACGAACCAAGGCAGAGTCTAACACTAACAGACTGAAAGCTCAAGGTTCCATGATGTCTGCTGTGGCTTGTGCTTCAGTTCCCAAAATTACTGTGGTTATTGGAGGATGCCATGGAGCTGATAGCTATGCTATGtgCGGAAGGGCTTTTGACCCTAATTTCCTGTTCCTGTGGCCTAATGCCAGAGTGTCGATTTTGGCTCCAGGCCACTCGGATGCACTTGTGCAGACTGAGGAGGCTGAAGAGGAAATCACACAGATTAATGAGATGCTGAAAGAAGAGAGTTCAGCATTCTTTTCTACCGGCAGACTGTGGGATGATGGTGTTATTCTTCCTCAAGACACAAGAAGggttttgagcaagTGCCTGAAAATCGTTAAGCAACAAGAGTATCAATTGTCCAGAGAGAAAACGAGGACTCCTTTTCTTCGATTATAACACTACCTCTGCAGAAACCTCAGTGAACTTCATAAACTTCTTAAAGTAATAAACTAACAGTGTTTGTGTTAAACacatatctttattttaatgccaaTTTGCTTGTTATCAGCAGCGGTGccttattatttagattttctgactgatgtaaaataaatctatttgtGCATATGGAATTTTACGTATGAATAAATCATTGTTCAAAAATGCTGaa
>XM_043247877.1
GCGGCGAGAAAAACCACGCGCCTGACGTCACGTGCTGAACTATCCTAGCTCTGGAAACGTCGTTTTTCGTTACActagaaaacattcaataatTTTATCCATTTGCCTCTCGCCTCGTCATGTACTGTAGTGTCTTAAGgtctttgcatttaaaaggGAATAATGTCATTCAGCTCACCAGAGCATCATTCTCTCAAAATTCACAGTCATGGGACACTACATCCAAGCTTTCCGGCTGCACCGCATACCACTGCACACCTTCACCTGCTTCAGGCAGTCTGTGGCAACCCTTGACAAATAGGACACACCAGCCATCAGCATCGTCCCGCTGTATGAGCTCCACTGTACGCAGGAGACGCCTGCCAAGTGCCTTTCCAATTATAGATGGAGAATTTCATCCAGCTCACAGACATGTGTATGAAGCCAATCTGAGGAACAGCCTAATCTGTCAGCAAAAATACCTTGAGCACAAGGAAAAAGTAATGAAGGGGGGTGGTGAAAATGCCATAGCACGGCATACGCAGAAGAATCGAAAGGTCCTCGTACGAGACAGACTCCGCATGCTGCTGGATGATGAAGATTATTTAGAACTTTCTCCTTTTGCTGGTCTTGGTCTGCCCTATGGAGACATCCCATCAGCAGGCTGTCTCTCAGGAATCGGTAAGATTAATGGACTTTGGTGCATGTTTGTTGCTAATGACGCCACGGTAAAAGGTGGCACAGCGTATCCCATCTCAGTTAAAAAGCAACTCAGGGCACAGTTTGTGGCCAAGCAGAATCGTTTGCCCTCTGTTTACTTGGTGGACAGTGGTGGCGCATTTCTCCCTCTTCAGTCAGATATCTTTCCTGATAAAAACCATGGAGGTCGCACCTTTTACAATGAAGCAGTTATGTCAGCAATGAAGATTCCTCAGGTTGCAATAGTGTGTGGCTCATGCACAGCTGGTGGCGCTTATACACCCACTATGTCTGAGGAGGCGGTGATTGTCCACCGGATAGGAACACTGTATTTGGGGGGTCCGCCGCTGGTGAAAGCTGCAACCGGAGAGGATGTTTCCCCAGAGGACCTGGGAGGAGCAAGGCTGCACTCAGAAGTGAGCGGCTGTATGGACCATTTTGCTGCAGCAGAAAATGAGGCATATGAAAATACCAGAAACATCATCTCCACCCTAAATTATGAGCTCCCAGAGGAGGACAGCACTTCGGTTGAGGAGCCCCTGTACAACGTGGACGATCTCATGGGCCTTGCACCTCGTTGCTACAATCACAGCATGGATGTCAGACTGATTGTGAGTCGACTGATCGATGGTAGTCGGTTTCAGGAGTTCAAAGCCCGTTACGGCACCCCTCTCCTCACTGGGTTTGCCAAAATTGAAGGtcatttagttgGAATCGTGGCAAATAACGGAGAGCTGACATATGAAGCTTCCCTGAAAGGCAGTCATTTTGTTCAGCTGTGTGATCAGAGGGACATTCCTCTCATCTTCCTGCAAAACACGGCACCAGAACCTGCACACACTTTCTCACGAACCAAGGCAGAGTCTAACACTAACAGACTGAAAGCTCAAGGTTCCATGATGTCTGCTGTGGCTTGTGCTTCAGTTCCCAAAATTACTGTGGTTATTGGAGGATGCCATGGAGCTGATAGCTATGCTATGtgCGGAAGGGCTTTTGACCCTAATTTCCTGTTCCTGTGGCCTAATGCCAGAGTGTCGATTTTGGCTCCAGGCCACTCGGATGCACTTGTGCAGACTGAGGAGGCTGAAGAGGAAATCACACAGATTAATGAGATGCTGAAAGAAGAGAGTTCAGCATTCTTTTCTACCGGCAGACTGTGGGATGATGGTGTTATTCTTCCTCAAGACACAAGAAGggttttgagcaagTGCCTGAAAATCGTTAAGCAACAAGAGTATCAATTGTCCAGAGAGAAAACGAGGACTCCTTTTCTTCGATTATAACACTACCTCTGCAGAAACCTCAGTGAACTTCATAAACTTCTTAAAGTAATAAACTAACAGTGTTTGTGTTAAACacatatctttattttaatgccaaTTTGCTTGTTATCAGCAGCGGTGccttattatttagattttctgactgatgtaaaataaatctatttgtGCATATGGAATTTTACGTATGAATAAATCATTGTTCAAAAATGCTGaa

Function

symbol description
si:ch211-198n5.11 Predicted to enable ligase activity. Predicted to contribute to methylcrotonoyl-CoA carboxylase activity. Predicted to be involved in leucine catabolic process. Predicted to be part of methylcrotonoyl-CoA carboxylase complex. Predicted to be active in mitochondrion. Is expressed in myotome.

NR:

description
methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247876.1 True 2393 mRNA 0.44 13 8457398 8463215
XM_043247877.1 False 2175 mRNA 0.46 14 8457234 8463215

Neighbor

gene id symbol gene type direction distance location
cdkn2c cdkn2c,LOC107699560,LOC107743873,LOC107707576,LOC107548184,LOC107599829,LOC107657864,LOC107550257 coding upstream 105766 8347283 ~ 8351468 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC107657884,LOC103028496 coding upstream 240352 8142874 ~ 8216882 (+)
LOC122350682 col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605 coding upstream 428845 8020224 ~ 8028389 (+)
dnttip2 LOC107707582,LOC107599013,LOC107657880,LOC107700367,LOC107603264 coding upstream 779878 7672038 ~ 7677356 (+)
gclm gclm,LOC107599012,LOC107657862,LOC107757997,LOC107699464,LOC107603255 coding upstream 785427 7667093 ~ 7671807 (+)
ercc8 ercc8,LOC107752444,LOC107599804,LOC107743893 coding downstream 17082 8480297 ~ 8488530 (+)
elovl7a elovl7,LOC107657867,LOC107752445,LOC107743866,LOC107599803,LOC107699661 coding downstream 25709 8488924 ~ 8494454 (+)
pde4d pde4d,LOC108443004,LOC103135434,LOC106534957,LOC107710914,LOC107657895,LOC107699688 coding downstream 35602 8498817 ~ 8599838 (+)
si:dkey-190g11.3 si:dkey-190g11.3,LOC107710909,LOC107657868,LOC107599833 coding downstream 143580 8606795 ~ 8610700 (+)
plk2b plk2,plk2b,LOC107599807,LOC107710915,LOC107657898,LOC107700579,LOC107743863 coding downstream 148282 8611497 ~ 8617069 (+)
G62013 NA non-coding upstream 62491 8392378 ~ 8394743 (+)
G62021 NA non-coding upstream 85513 8362077 ~ 8371721 (+)
LOC122350828 NA non-coding upstream 102783 8352031 ~ 8354451 (+)
G62002 NA non-coding upstream 173250 8283760 ~ 8283984 (+)
LOC122350903 NA non-coding upstream 176899 8275575 ~ 8280335 (+)
G62064 NA non-coding downstream 2034 8465249 ~ 8467096 (+)
G62045 LOC107599802,LOC107657894,LOC107743884,LOC107548279,LOC107699654 non-coding downstream 5842 8469057 ~ 8470836 (+)
G62106 NA non-coding downstream 124465 8587680 ~ 8652567 (+)
G62215 NA non-coding downstream 510882 8974097 ~ 8974345 (+)
G62216 NA non-coding downstream 511183 8974398 ~ 8974669 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 928148 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 1607523 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 1690691 6756105 ~ 6766543 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other upstream 3192868 5104570 ~ 5264366 (+)
smim15 smim15,LOC107700545 other downstream 13956 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 1241266 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 1885699 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 1968587 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 2072928 10536143 ~ 10551791 (+)

Expression


Co-expression Network