RNA id: XM_043247876.1


Basic Information

Item Value
RNA id XM_043247876.1
length 2393
RNA type mRNA
GC content 0.44
exon number 13
gene id si:ch211-198n5.11
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8457234 ~ 8463215 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTTAACGTGTATCGTATTTCATGTAATGCTGGATGCTTTATggaatattgtttatttttcagttttctttacTATAATAGCCTCGCCTTGAATGATAGAATAgaattaaaacataatgtatCGGAATAGCTTATGATGAATTCTACCAAGTCAAGTTTGCGCCATAGACACTAACTTACTGATCTATACTGCACTCTAGTGGTCATTATACACGTATGCGTAATATATACGTTATACATATCAAACGTTCCTTTCTGCTTGTTTCCTTCCAGACGTCGTTTTTCGTTACActagaaaacattcaataatTTTATCCATTTGCCTCTCGCCTCGTCATGTACTGTAGTGTCTTAAGgtctttgcatttaaaaggGAATAATGTCATTCAGCTCACCAGAGCATCATTCTCTCAAAATTCACAGTCATGGGACACTACATCCAAGCTTTCCGGCTGCACCGCATACCACTGCACACCTTCACCTGCTTCAGGCAGTCTGTGGCAACCCTTGACAAATAGGACACACCAGCCATCAGCATCGTCCCGCTGTATGAGCTCCACTGTACGCAGGAGACGCCTGCCAAGTGCCTTTCCAATTATAGATGGAGAATTTCATCCAGCTCACAGACATGTGTATGAAGCCAATCTGAGGAACAGCCTAATCTGTCAGCAAAAATACCTTGAGCACAAGGAAAAAGTAATGAAGGGGGGTGGTGAAAATGCCATAGCACGGCATACGCAGAAGAATCGAAAGGTCCTCGTACGAGACAGACTCCGCATGCTGCTGGATGATGAAGATTATTTAGAACTTTCTCCTTTTGCTGGTCTTGGTCTGCCCTATGGAGACATCCCATCAGCAGGCTGTCTCTCAGGAATCGGTAAGATTAATGGACTTTGGTGCATGTTTGTTGCTAATGACGCCACGGTAAAAGGTGGCACAGCGTATCCCATCTCAGTTAAAAAGCAACTCAGGGCACAGTTTGTGGCCAAGCAGAATCGTTTGCCCTCTGTTTACTTGGTGGACAGTGGTGGCGCATTTCTCCCTCTTCAGTCAGATATCTTTCCTGATAAAAACCATGGAGGTCGCACCTTTTACAATGAAGCAGTTATGTCAGCAATGAAGATTCCTCAGGTTGCAATAGTGTGTGGCTCATGCACAGCTGGTGGCGCTTATACACCCACTATGTCTGAGGAGGCGGTGATTGTCCACCGGATAGGAACACTGTATTTGGGGGGTCCGCCGCTGGTGAAAGCTGCAACCGGAGAGGATGTTTCCCCAGAGGACCTGGGAGGAGCAAGGCTGCACTCAGAAGTGAGCGGCTGTATGGACCATTTTGCTGCAGCAGAAAATGAGGCATATGAAAATACCAGAAACATCATCTCCACCCTAAATTATGAGCTCCCAGAGGAGGACAGCACTTCGGTTGAGGAGCCCCTGTACAACGTGGACGATCTCATGGGCCTTGCACCTCGTTGCTACAATCACAGCATGGATGTCAGACTGATTGTGAGTCGACTGATCGATGGTAGTCGGTTTCAGGAGTTCAAAGCCCGTTACGGCACCCCTCTCCTCACTGGGTTTGCCAAAATTGAAGGtcatttagttgGAATCGTGGCAAATAACGGAGAGCTGACATATGAAGCTTCCCTGAAAGGCAGTCATTTTGTTCAGCTGTGTGATCAGAGGGACATTCCTCTCATCTTCCTGCAAAACACGGCACCAGAACCTGCACACACTTTCTCACGAACCAAGGCAGAGTCTAACACTAACAGACTGAAAGCTCAAGGTTCCATGATGTCTGCTGTGGCTTGTGCTTCAGTTCCCAAAATTACTGTGGTTATTGGAGGATGCCATGGAGCTGATAGCTATGCTATGtgCGGAAGGGCTTTTGACCCTAATTTCCTGTTCCTGTGGCCTAATGCCAGAGTGTCGATTTTGGCTCCAGGCCACTCGGATGCACTTGTGCAGACTGAGGAGGCTGAAGAGGAAATCACACAGATTAATGAGATGCTGAAAGAAGAGAGTTCAGCATTCTTTTCTACCGGCAGACTGTGGGATGATGGTGTTATTCTTCCTCAAGACACAAGAAGggttttgagcaagTGCCTGAAAATCGTTAAGCAACAAGAGTATCAATTGTCCAGAGAGAAAACGAGGACTCCTTTTCTTCGATTATAACACTACCTCTGCAGAAACCTCAGTGAACTTCATAAACTTCTTAAAGTAATAAACTAACAGTGTTTGTGTTAAACacatatctttattttaatgccaaTTTGCTTGTTATCAGCAGCGGTGccttattatttagattttctgactgatgtaaaataaatctatttgtGCATATGGAATTTTACGTATGAATAAATCATTGTTCAAAAATGCTGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91827 lncRNA upstream 62655 8392378 ~ 8394743 (+) True G62013
TU91837 lncRNA upstream 85677 8362077 ~ 8371721 (+) True G62021
XR_006251625.1 lncRNA upstream 102947 8352031 ~ 8354451 (+) True LOC122350828
TU91828 lncRNA upstream 103097 8352566 ~ 8354301 (+) False LOC122350828
TU91814 lncRNA upstream 173414 8283760 ~ 8283984 (+) True G62002
TU91897 lncRNA downstream 2034 8465249 ~ 8467096 (+) True G62064
TU91872 lncRNA downstream 5842 8469057 ~ 8470836 (+) True G62045
TU91869 lncRNA downstream 14011 8477226 ~ 8478331 (+) False smim15
TU91974 lncRNA downstream 124465 8587680 ~ 8652567 (+) True G62106
TU92132 lncRNA downstream 510882 8974097 ~ 8974345 (+) True G62215
XM_043245981.1 mRNA upstream 105930 8347283 ~ 8351468 (+) True cdkn2c
XM_043247157.1 mRNA upstream 240516 8144177 ~ 8216882 (+) False elavl4
XM_043247027.1 mRNA downstream 13956 8477171 ~ 8478326 (+) True smim15
XM_043247023.1 mRNA downstream 17082 8480297 ~ 8488530 (+) False ercc8
XM_043247022.1 mRNA downstream 17590 8480805 ~ 8488530 (+) True ercc8
XM_043247025.1 mRNA downstream 25709 8488924 ~ 8494454 (+) False elovl7a
XM_043247024.1 mRNA downstream 25712 8488927 ~ 8494454 (+) True elovl7a
TU91548 other upstream 928330 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 933502 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1607687 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1607687 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1690855 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1241266 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 1885744 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 1968587 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2005659 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2729509 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile