RNA id: TU91897


Basic Information

Item Value
RNA id TU91897
length 1558
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G62064
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8465249 ~ 8467096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGGTGGAGGGATCTTGATAATGTTGTAGGCCAATGACATGTTCTTCCCAAAGCAGTTTCCAATGTTATATACAGTACCGTCCGGTTCAGTATGTGGATGTGCTGTCACACCATTGACTGAGAGATAATTGCAAAGGTCCACCTATGGGAAGTAAAGATATTAAACAAacagttcatgcaaaaatgagAATTTGCTGAAAATCTACTTACCCTCCTTAGCCcttctaaaaaattaaaaagctcaCCAAtcaatcctctgcagtgaatgggtgctgttagaatgagagtccaaaaagctgataaaaacattatgatAATCTATTAGTAATAAGCATGGCTATGTTacttgatggactggagtcacaTGGAtaacttgtggattattgtgatgttttcttcAGCTatttgggctctcattctgacggcacccattcactgagcaaatgatgcaatgcaaatctgttctgataaagaaagaaggtgagtacattttcagcaaatcctaatttttaggtgaactattcctttaaaagatgtatttttttgttaatggcCTCAAAATTGAGAAACAGTTCAAAAGCCTACCCTTTTTATTGTTTCTAGGGTATCAGGATCAACTTTAGTTATGTAGTTGGTTTCCGTGCAGGCATAGAAGTCCTCACCAATGGGGTAGATGTTGACAAGGCAGTTGTCTGTCACCTCAATACCTTGAAAGTAAGTAAAAAAacCTCGAAAAGATGTTTTTGCATGGATCTGGATATGCAGTGGTACCGAACTCTGTGATCACAATCCTTTTCTCTGTCATGGCTCTCACATAAGCATCAGTTCTGATAAATCTGTTAAAGCTACCTGCGGTAATAAGTGACATGTCCATCCTTCAGGTCAAACTTGTGAATGAGAGCCTGGCCATCAAAAATGTGGTAAAAAGGTTCATCTCCTATCTCAAAGAGCCCAGGGCCCACACGGAGCAAACTGCCAGTGAGCCAGGCAGGGATTTTGCctgcagaaagagaaaaaggttCACTTTAACCAAACAAATTGTTTAGCCTccaaatgtttataaaatggcTACATACCATATCAAACGCTACAAGGCATTTACATAGGACACAGCAGAAGCTGCATATGCTTTTCTCGCCAATGAAAGCATGGAGAAATGTGGAAAGTTATCAAACTGACAGTGCTTGATTTATAAGATTATAGGCATACAAACCTGAGACACGAGCAGGAATGGGCTCAGCTAACTCTTCACACgattcaaagatttttttatagcCACCGGCTGGGTGTTCAAGACTGTGAATGAAAACAGATGTCCATATTTCTAACACAATGACGTGACATGAAAAAGAACTTATACTAATATACTCATTCTTGAGGTATTTTGCACATACTTCGAAATTATACATTACCAAAGGAATGCAAACgtaaaaggaaagaaaacgaTTAAggaaacacttttaaaaagaagtgtttttacaattttgccattttccagaaatatacaataaacactTTTGCACAGTTTGAACAGCTTAACTGAGAGTTAAAATTTC

Function

GO:

id name namespace
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91827 lncRNA upstream 70506 8392378 ~ 8394743 (+) True G62013
TU91837 lncRNA upstream 93528 8362077 ~ 8371721 (+) True G62021
XR_006251625.1 lncRNA upstream 110798 8352031 ~ 8354451 (+) True LOC122350828
TU91828 lncRNA upstream 110948 8352566 ~ 8354301 (+) False LOC122350828
TU91814 lncRNA upstream 181265 8283760 ~ 8283984 (+) True G62002
TU91872 lncRNA downstream 1961 8469057 ~ 8470836 (+) True G62045
TU91869 lncRNA downstream 10130 8477226 ~ 8478331 (+) False smim15
TU91974 lncRNA downstream 120584 8587680 ~ 8652567 (+) True G62106
TU92132 lncRNA downstream 507001 8974097 ~ 8974345 (+) True G62215
TU92133 lncRNA downstream 507302 8974398 ~ 8974669 (+) True G62216
XM_043247877.1 mRNA upstream 2034 8457234 ~ 8463215 (+) False si:ch211-198n5.11
XM_043247876.1 mRNA upstream 2034 8457398 ~ 8463215 (+) True si:ch211-198n5.11
XM_043245981.1 mRNA upstream 113781 8347283 ~ 8351468 (+) True cdkn2c
XM_043247157.1 mRNA upstream 248367 8144177 ~ 8216882 (+) False elavl4
XM_043247027.1 mRNA downstream 10075 8477171 ~ 8478326 (+) True smim15
XM_043247023.1 mRNA downstream 13201 8480297 ~ 8488530 (+) False ercc8
XM_043247022.1 mRNA downstream 13709 8480805 ~ 8488530 (+) True ercc8
XM_043247025.1 mRNA downstream 21828 8488924 ~ 8494454 (+) False elovl7a
XM_043247024.1 mRNA downstream 21831 8488927 ~ 8494454 (+) True elovl7a
TU91548 other upstream 936181 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 941353 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1615538 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1615538 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1698706 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1237385 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 1881863 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 1964706 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2001778 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2725628 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile