ercc8 (ercc8,LOC107752444,LOC107599804,LOC107743893)


Basic Information

Item Value
gene id ercc8
gene name ercc8,LOC107752444,LOC107599804,LOC107743893
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8480297 ~ 8488530 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247022.1
ACATGGCTGCCTCCTATCCAACAAAGTGCACAACAATCATATTATAAAGCTGAAAAAGATAATATACATTTAGTACGGTGTGCAGAAtgaatttgtttagtttaaaaacgCGGTTTTACAGGCTAAAAAATCGCCACTCAAAAGCTGGGGTAACAGACTGTAAACAGACATCTGTTATGGTTATTTCACTCTGACAACATAGTCATACTGCACAATACtagcataaacataaacaattcTATGTCTCTACAACGATGCTGAGTTTTCTTTATGCCAGGCAATCGGGGCTTGACGAGCCAGTTCGTCTGAGACGCGCAGAGTCTACAAGAAgGGTGCTGAGTCTGGAGTTGAACCACAACAGAGATGTTGATCGTATTCATGGCAATGGAATTAACACCATTGACATTGAGGTTATTGATGGAAGATATATGTTGTCAGGTGGATCTGATGGCGTTATTGTGATCTATGACTTGGAAAACAACAGCAAGAAGCCTCAATACACTTGCAAAGCAATCCACACAGTGGGCAGGTCCAGTCGACATGTGCATAAATTCAGCGTTGAAACAGTGCAGTGGTACCCACATGACACTGGTATGTTTGTATCCAGTTCATTCGACAAAACCATGAAAGTCTGGGACACAGAAACTCTaaagccaGCTGAGGAGTTCCAGTTTGGTGGCAATGTCTACTGTCATCACATGTCTCCTATAGCCAGGAAGCACAGTCTTGTAGCAGTTGGTACCAAAGACCCCAAAGTGCAGCTTTGTGATCTAAAGTCTGGGTCGCGCATCCACATCCTTCAGGGTCACAGGGGTGAGATCCTCTCAGTGAGATGGTCTCCACGATACGAGCACATCCTGGCCACCGCCAGCACTGACAGTAGGGTTCGTGTCTGGGATGTGAGGAGAGCCTCAGGGAGTCTTTTTACTTTGGACCAGCACAACGGGGACAAATCCAAGGCCTCATCCGAAGCAGTGAACACAGCACACAATGGGCGAGTGAATGGATTGTGCTTCACAGCTGATGGACTTCATCTCCTCACTACTGGGACAGATGATCGTATGCGCCTATGGAACAGTGCCACAGGGGAAAACACATTAGTGAACTATGGGAAGGTCGTGAACGAGAGTCGCAAAGGCCTGAAGTTTACCGTATCGAGGGGCTGCAGTCCAGAGTTTGTGTTTGTGCCGTGTGGCAGTTCGGTAGCGGTGTATGGGCTTCACTCAGGAGAGCTGATCACTATGTTGAGAGGACATTATAATAATGTTGACTGCTGTGAGTTCCACCCAGACTATCAGGAGCTGTACAGTGGAGGTAAAGACTGTAACATCCTGGCCTGGGTTCCAGTGCTGAGACAGCCTGACATTGAGGATGATGAAACCAACTCTAAAAGGaGTGATGCACAAGCTGCAATCAATCCTGCTTTTGAAGATGCCTGGAGCAGCGATGAAGACTGACAAAGCAAGGAAACCATCACTCTGTTTTTTAATATCCAAATAAACCACTATATACATGCCCTCAGATGTCAAAGTGCTCTTACTGCATCCATTATTGCATTGATGGGTGCAAATAAAGTCACTGTACACAAAAGTAGACTCATGGGTGTCCTGTACTTTCATTGGTTGTCACCTACTCATTTGcctgtgtatttaaaatttgacaTCACCTTCAGCTTGTGTCATGGGCTTCACTTCTACAGGATTTGCATTTAACATAGATGTGGACTACAAGCTCTCAcatcaacaacaaataaataccaTGAAttggtgtaaaaataaataataaaaactttatgaCTATGCTGAA
>XM_043247023.1
CTGAAGATTGGAAGATGACGCAATCGGGGCTTGACGAGCCAGTTCGTCTGAGACGCGCAGAGTCTACAAGAAgGGTGCTGAGTCTGGAGTTGAACCACAACAGAGATGTTGATCGTATTCATGGCAATGGAATTAACACCATTGACATTGAGGTTATTGATGGAAGATATATGTTGTCAGGTGGATCTGATGGCGTTATTGTGATCTATGACTTGGAAAACAACAGCAAGAAGCCTCAATACACTTGCAAAGCAATCCACACAGTGGGCAGGTCCAGTCGACATGTGCATAAATTCAGCGTTGAAACAGTGCAGTGGTACCCACATGACACTGGTATGTTTGTATCCAGTTCATTCGACAAAACCATGAAAGTCTGGGACACAGAAACTCTaaagccaGCTGAGGAGTTCCAGTTTGGTGGCAATGTCTACTGTCATCACATGTCTCCTATAGCCAGGAAGCACAGTCTTGTAGCAGTTGGTACCAAAGACCCCAAAGTGCAGCTTTGTGATCTAAAGTCTGGGTCGCGCATCCACATCCTTCAGGGTCACAGGGGTGAGATCCTCTCAGTGAGATGGTCTCCACGATACGAGCACATCCTGGCCACCGCCAGCACTGACAGTAGGGTTCGTGTCTGGGATGTGAGGAGAGCCTCAGGGAGTCTTTTTACTTTGGACCAGCACAACGGGGACAAATCCAAGGCCTCATCCGAAGCAGTGAACACAGCACACAATGGGCGAGTGAATGGATTGTGCTTCACAGCTGATGGACTTCATCTCCTCACTACTGGGACAGATGATCGTATGCGCCTATGGAACAGTGCCACAGGGGAAAACACATTAGTGAACTATGGGAAGGTCGTGAACGAGAGTCGCAAAGGCCTGAAGTTTACCGTATCGAGGGGCTGCAGTCCAGAGTTTGTGTTTGTGCCGTGTGGCAGTTCGGTAGCGGTGTATGGGCTTCACTCAGGAGAGCTGATCACTATGTTGAGAGGACATTATAATAATGTTGACTGCTGTGAGTTCCACCCAGACTATCAGGAGCTGTACAGTGGAGGTAAAGACTGTAACATCCTGGCCTGGGTTCCAGTGCTGAGACAGCCTGACATTGAGGATGATGAAACCAACTCTAAAAGGaGTGATGCACAAGCTGCAATCAATCCTGCTTTTGAAGATGCCTGGAGCAGCGATGAAGACTGACAAAGCAAGGAAACCATCACTCTGTTTTTTAATATCCAAATAAACCACTATATACATGCCCTCAGATGTCAAAGTGCTCTTACTGCATCCATTATTGCATTGATGGGTGCAAATAAAGTCACTGTACACAAAAGTAGACTCATGGGTGTCCTGTACTTTCATTGGTTGTCACCTACTCATTTGcctgtgtatttaaaatttgacaTCACCTTCAGCTTGTGTCATGGGCTTCACTTCTACAGGATTTGCATTTAACATAGATGTGGACTACAAGCTCTCAcatcaacaacaaataaataccaTGAAttggtgtaaaaataaataataaaaactttatgaCTATGCTGAA

Function

symbol description
ercc8 Predicted to contribute to ubiquitin-protein transferase activity. Acts upstream of or within response to UV. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex and nucleotide-excision repair complex. Human ortholog(s) of this gene implicated in Cockayne syndrome; Cockayne syndrome A; and UV-sensitive syndrome. Orthologous to human ERCC8 (ERCC excision repair 8, CSA ubiquitin ligase complex subunit).

NR:

description
DNA excision repair protein ERCC-8 isoform X1

GO: NA

KEGG:

id description
K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247022.1 True 1806 mRNA 0.44 12 8480805 8488530
XM_043247023.1 False 1548 mRNA 0.46 13 8480297 8488530

Neighbor

gene id symbol gene type direction distance location
si:ch211-198n5.11 si:ch211-198n5.11,LOC107657892,LOC107752441,LOC107599801,LOC108265604,LOC107700393 coding upstream 17082 8457234 ~ 8463215 (+)
cdkn2c cdkn2c,LOC107699560,LOC107743873,LOC107707576,LOC107548184,LOC107599829,LOC107657864,LOC107550257 coding upstream 128829 8347283 ~ 8351468 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC107657884,LOC103028496 coding upstream 263415 8142874 ~ 8216882 (+)
LOC122350682 col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605 coding upstream 451908 8020224 ~ 8028389 (+)
dnttip2 LOC107707582,LOC107599013,LOC107657880,LOC107700367,LOC107603264 coding upstream 802941 7672038 ~ 7677356 (+)
elovl7a elovl7,LOC107657867,LOC107752445,LOC107743866,LOC107599803,LOC107699661 coding downstream 394 8488924 ~ 8494454 (+)
pde4d pde4d,LOC108443004,LOC103135434,LOC106534957,LOC107710914,LOC107657895,LOC107699688 coding downstream 10287 8498817 ~ 8599838 (+)
si:dkey-190g11.3 si:dkey-190g11.3,LOC107710909,LOC107657868,LOC107599833 coding downstream 118265 8606795 ~ 8610700 (+)
plk2b plk2,plk2b,LOC107599807,LOC107710915,LOC107657898,LOC107700579,LOC107743863 coding downstream 122967 8611497 ~ 8617069 (+)
mier3b LOC107710916,LOC107599834,LOC107657869 coding downstream 151372 8639902 ~ 8644985 (+)
G62046 ndufaf2,LOC107743894,LOC107657848,LOC107752447 non-coding upstream 609 8449053 ~ 8479688 (+)
G62045 LOC107599802,LOC107657894,LOC107743884,LOC107548279,LOC107699654 non-coding upstream 9461 8469057 ~ 8470836 (+)
G62064 NA non-coding upstream 13201 8465249 ~ 8467096 (+)
G62013 NA non-coding upstream 85554 8392378 ~ 8394743 (+)
G62021 NA non-coding upstream 108576 8362077 ~ 8371721 (+)
G62106 NA non-coding downstream 99150 8587680 ~ 8652567 (+)
G62215 NA non-coding downstream 485567 8974097 ~ 8974345 (+)
G62216 NA non-coding downstream 485868 8974398 ~ 8974669 (+)
G62231 dio1,LOC107700640 non-coding downstream 543989 9032519 ~ 9037868 (+)
G62314 obscna,LOC107657853,LOC107758262,LOC107585905 non-coding downstream 701525 9190055 ~ 9191320 (+)
smim15 smim15,LOC107700545 other upstream 1966 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 951211 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 1630586 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 1713754 6756105 ~ 6766543 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other upstream 3215931 5104570 ~ 5264366 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 1215951 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 1860384 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 1943272 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 2047613 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 2704194 11192724 ~ 11197803 (+)

Expression


Co-expression Network