RNA id: XM_043247023.1


Basic Information

Item Value
RNA id XM_043247023.1
length 1548
RNA type mRNA
GC content 0.46
exon number 13
gene id ercc8
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8480297 ~ 8488530 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAAGATTGGAAGATGACGCAATCGGGGCTTGACGAGCCAGTTCGTCTGAGACGCGCAGAGTCTACAAGAAgGGTGCTGAGTCTGGAGTTGAACCACAACAGAGATGTTGATCGTATTCATGGCAATGGAATTAACACCATTGACATTGAGGTTATTGATGGAAGATATATGTTGTCAGGTGGATCTGATGGCGTTATTGTGATCTATGACTTGGAAAACAACAGCAAGAAGCCTCAATACACTTGCAAAGCAATCCACACAGTGGGCAGGTCCAGTCGACATGTGCATAAATTCAGCGTTGAAACAGTGCAGTGGTACCCACATGACACTGGTATGTTTGTATCCAGTTCATTCGACAAAACCATGAAAGTCTGGGACACAGAAACTCTaaagccaGCTGAGGAGTTCCAGTTTGGTGGCAATGTCTACTGTCATCACATGTCTCCTATAGCCAGGAAGCACAGTCTTGTAGCAGTTGGTACCAAAGACCCCAAAGTGCAGCTTTGTGATCTAAAGTCTGGGTCGCGCATCCACATCCTTCAGGGTCACAGGGGTGAGATCCTCTCAGTGAGATGGTCTCCACGATACGAGCACATCCTGGCCACCGCCAGCACTGACAGTAGGGTTCGTGTCTGGGATGTGAGGAGAGCCTCAGGGAGTCTTTTTACTTTGGACCAGCACAACGGGGACAAATCCAAGGCCTCATCCGAAGCAGTGAACACAGCACACAATGGGCGAGTGAATGGATTGTGCTTCACAGCTGATGGACTTCATCTCCTCACTACTGGGACAGATGATCGTATGCGCCTATGGAACAGTGCCACAGGGGAAAACACATTAGTGAACTATGGGAAGGTCGTGAACGAGAGTCGCAAAGGCCTGAAGTTTACCGTATCGAGGGGCTGCAGTCCAGAGTTTGTGTTTGTGCCGTGTGGCAGTTCGGTAGCGGTGTATGGGCTTCACTCAGGAGAGCTGATCACTATGTTGAGAGGACATTATAATAATGTTGACTGCTGTGAGTTCCACCCAGACTATCAGGAGCTGTACAGTGGAGGTAAAGACTGTAACATCCTGGCCTGGGTTCCAGTGCTGAGACAGCCTGACATTGAGGATGATGAAACCAACTCTAAAAGGaGTGATGCACAAGCTGCAATCAATCCTGCTTTTGAAGATGCCTGGAGCAGCGATGAAGACTGACAAAGCAAGGAAACCATCACTCTGTTTTTTAATATCCAAATAAACCACTATATACATGCCCTCAGATGTCAAAGTGCTCTTACTGCATCCATTATTGCATTGATGGGTGCAAATAAAGTCACTGTACACAAAAGTAGACTCATGGGTGTCCTGTACTTTCATTGGTTGTCACCTACTCATTTGcctgtgtatttaaaatttgacaTCACCTTCAGCTTGTGTCATGGGCTTCACTTCTACAGGATTTGCATTTAACATAGATGTGGACTACAAGCTCTCAcatcaacaacaaataaataccaTGAAttggtgtaaaaataaataataaaaactttatgaCTATGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91873 lncRNA upstream 609 8449053 ~ 8479688 (+) True G62046
TU91869 lncRNA upstream 1966 8477226 ~ 8478331 (+) False smim15
TU91872 lncRNA upstream 9461 8469057 ~ 8470836 (+) True G62045
TU91897 lncRNA upstream 13201 8465249 ~ 8467096 (+) True G62064
TU91827 lncRNA upstream 85554 8392378 ~ 8394743 (+) True G62013
TU91974 lncRNA downstream 99150 8587680 ~ 8652567 (+) True G62106
TU92132 lncRNA downstream 485567 8974097 ~ 8974345 (+) True G62215
TU92133 lncRNA downstream 485868 8974398 ~ 8974669 (+) True G62216
TU92160 lncRNA downstream 543989 9032519 ~ 9035747 (+) True G62231
TU92153 lncRNA downstream 545632 9034162 ~ 9037868 (+) False G62231
XM_043247027.1 mRNA upstream 1971 8477171 ~ 8478326 (+) True smim15
XM_043247877.1 mRNA upstream 17082 8457234 ~ 8463215 (+) False si:ch211-198n5.11
XM_043247876.1 mRNA upstream 17082 8457398 ~ 8463215 (+) True si:ch211-198n5.11
XM_043245981.1 mRNA upstream 128829 8347283 ~ 8351468 (+) True cdkn2c
XM_043247153.1 mRNA upstream 263415 8158583 ~ 8216882 (+) False elavl4
XM_043247025.1 mRNA downstream 394 8488924 ~ 8494454 (+) False elovl7a
XM_043247024.1 mRNA downstream 397 8488927 ~ 8494454 (+) True elovl7a
XM_043247307.1 mRNA downstream 10287 8498817 ~ 8599838 (+) False pde4d
XM_043247306.1 mRNA downstream 22464 8510994 ~ 8599838 (+) True pde4d
XM_043247308.1 mRNA downstream 42932 8531462 ~ 8599838 (+) False pde4d
TU91548 other upstream 951229 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 956401 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1630586 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1630586 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1713754 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1215951 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 1860429 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 1943272 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 1980344 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2704194 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile