RNA id: XM_043247306.1


Basic Information

Item Value
RNA id XM_043247306.1
length 4992
RNA type mRNA
GC content 0.41
exon number 15
gene id pde4d
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8498817 ~ 8599838 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTCCAGGCGAGGCGCGAGACAGGGATGCTGGATGTTGTTGCGTGGACCTCGAAGATTTGGGCACCAATTTGACGGGACAAGCGTTTATTGTCCGAAGTTTTGTGTTATTATGGACGCTACGATAGAAGCGAGCAATGGTGCCTATAGACGATGAACTCTTGGACAGAATGGGTCGATCCAGAATAGTAAACATCAAAATTGACTTTTCGCTTTATATGcctttgcatattttatgtaGAATATTACTGCTCTCTTTGAAATAGCACTAACGGTGTACTTTACACTACGCTTTCTTATGGATGTTTTCCAAGTTTCGGACATTTCGCGCCAAAGCTAGTTGCAATAATTATCTCACAAAATTACAGTGTTTTGACGAATTTTAGCGAGACTGTACTCGTGCGAGAATGGACGCCGGAAGCGAGGTGTCAACTTTGGTTTCTCCCGGTACCGATGGAAATGCGCCAAAACATCTGTGGAGGCAACAGAGCCCGGTTCCTCTTCAGATCCAGAACTCTTTCGGCTCGCGCAAGAACTACCGGGTGAGACAGAGAGGCTTTTCAGACACGGAGAAGTACCTGAATCCCAGGACCATGGACCGGAGCTATGCCGTGGACACCGGTAACCGTCCCGGTTTGAAGAAGTCCAGAATGTCATGGCCATCATCCTTTCAAGGACTTAAACGCTTTGATGTGGACAATGGCACCTCATCAGGACGTAGTCCGCTGGATCCCATGGCGAGCCCAGGGTCAGGTCTCATCCTTCAGGCCAACTTTGTGCACAGCCAGAGGAGAGAGTCCTTCCTGTACCGCTCTGACAGCGACTATGACCTCTCACCAAAGTCTATGTCCAGAAACTCCTCCATCGCCAGTGACATACACGGTGATGACATGATTGTTACCCCTTTTGCACAGGTTCTAGCAAGTTTAAGGACTGTCCGGAATAATTTTGCTGCTTTAACAAATGTACAACAAGAAAGGGCCAATAACAAGAGATCCCCGATGTGTAACCCACCTCCCATCACAAAGACCTCCTACACAGAGGAGGCCTACCAGAAACTGGCCACAGAGACCCTGGAGGAGCTTGACTGGTGCCTTGACCAGCTTGAGACCCTCCAAACCAGGCATTCGGTCAGCGAGATGGCATCCAACAAGTTCAAGAGGATGTTGAATAGAGAATTGACTCACCTCTCAGAGATGAGCCGTTCTGGTAACCAGGTGTCTGAGTTCATCTCCAGTACATTCTTAGacAAGCAACATGAGGTGGAAATGCCATCGCCCCAGTCCCAGAAAGacaaggagaagaagaaaaggcCAATGTCCCAGATTAGTGGTGTAAAAAAATTAACGCACAGTTCCAGCCTTACCAACTCTAACATCCCTCGGTTTGGAGTTAAAACTGAAACAGAAGATGAGCTGGCCAagGAGCTTGAAGATGTAAATAAATGGGGCCTTAATGTCTTCAAAGTGTCAGAATTTTCTGGGAACAGACCTTTAACGGTTATGATGTACACAATATTCCAGGAGAGGGACTtgttaaagacatttaaaattcCCCTCGACACGTTTATCACCTATCTGATGACTTTAGAGGACCATTACCATGCTGACGTTGCCTATCACAACAACATCCACGCTGCTGATGTCACACAATCCACTCACGTCCTGTTATCAACCCCTGCCCTTGAGGCTGTGTTTACAGACCTTGAAATTCTTGCTGCCATATTTGCCAGTGCGATACATGATGTTGACCATCCTGGCGTCTCCAACCAGTTTCTCATCAACACTAACTCTGAGCTGGCCCTCATGTATAACGATTCGTCTGTGTTGGAGAATCATCACCTGGCTGTAGGTTTTAAACTGCTGCAGGAAGAGAACTGTGACATCTTCCAGAACTTGACCAAGAAACAGAGACAGTCACTTCGCAAGATGGTCATTGACATTgttttGGCCACAGACATGTCTAAGCACATGAATTTGTTGGCCGATCTGAAAACCATGGTGGAGACCAAAAAAGTGACCAGTTCTGGGGTATTACTGCTGGATAACTACTCTGACAGGATACAGGTCTTGCAGAACATGGTGCACTGTGCAGACCTCAGTAACCCCACCAAGCCGCTGCAGCTGTACAGGCAGTGGACGGACCGCATCATGGAGGAGTTCTTCAGTCAGGGAGACAGAGAGCGGGAACGCGGCATGGAGATCAGCCCCATGTGCGACAAGCACAACGCCTCAGTCGAGAAGTCCCAGGTGGGCTTCATCGATTACATTGTCCACCCACTGTGGGAGACGTGGGCAGACCTGGTGCACCCAGACGCCCAGGACATCTTGGACACGCTGGAAGACAACAGGGAGTGGTACCAGAGCACCATCCCCCAGAGCCCCTCTCCGGCTCTGGACACCAGCAGCGAGGGCAGACGCACCGCCGGCCAGGAGAAGTTCCAGTTTGAACTGACTCTGGAGGAGGACGGGGAATCCGACACGGAGAAGGACAGCGGCAGCCCTCctgatgaagaggaagaggaagaggaagaaaacaGCTGCAGTGACTCTAAAACCCTTTGCACACAGGACTCTGAATGTACAGAGATCCCCCTGGATGAGCAGGTGGGGGACGCACAGGAGGACGAGGACGAGGAAGACGAGCAGGAGGAGGAAACGGAAATATCAGAACCCTGTGTTttagaggaggaagaggaggaggaggaggaggaggaggaagaggacacTGCCAACACATAACACAGTATGACACGGCACCAgaacttttttatattagaGATGAGAAACACTTATTTATGGTTAagatattagttttttttcattgtctaTTTTGCATACGTCGTTcagaagtgcttttttaaatgtccgcctttaacatgtttttatttttcattcctCACTtccttttctgtattttttttttttttttttagttttaaccaTTTTTACACTCAGGAATATCTTTTCCACTCCCACCTGTCATTCATAAAGACAAACTAAACAAACGAAAGGTTGAAAAGCTCGACTTGTATTCCTGATCGTGaggtacttttatttattcattttttttgactgaatcAGTATTTCAGAAACGTTTAACTTAGAAAGCAGCTGTTTTTCACCAATGAGACAcaatattttcctgtttatctgAAGGAAAGTGGCAATTCGAAGCATTTTAGCAGACAAACACTTTAGAAGTGAATACTTCATGCTTTGAACTTCACGTCTTCCTGATGCCTTGAATGTGTTATTAATCTGGATTTAGCtgtctgttgtgtttgtgtatcaGTCATTATTTGAAGTGAATGGACATGGTACCAAAGTGAAGAGAACTCATGAGACACCACTTTCACATGAAAGCAcccattttcatttaaatgaccaTATTGGgggtaaatatgtaaatgtggtaatttccacttttttatttgtttttactttattcgCTGCATCCAATCCAGATctcaatacatatatatatatatatatatatatatacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatacacacatatatatatatatatatatatatatatgggttttTGCTCAGTTAATTAATACCTAATTATGACCAACATCTAAAAAAATCCCCAAGAACAAGAAACGAAATCTGTTCTAAAATAATAGCTTGAATAAGCCTTAAATGAGTTTTGCCTAtcattgttttctattttgctagaaatgcagtaaaatgaaTCCTGGTGATCATTTTATatcaataacaatattattacaaagaATTAGAAATTactacaataattattattataattaaatactgatgatgatgaggatgataatgataataataatacgtattattatgattattattattatgcccctgcttttttttctcataaatgCTGGCCAGCTGTTTGGTGCCATACGTCCCTGGCCAGTTAAACAGAAAACGGCTGACATAAATAATCAAGCTCAATTTAGTGTGTTGTCACATGATCACGGGACAATCAGCTTCAGTGCAAAGTCTCATTGTAAGTGTGAACCTAGTTGCACTGTACTTTTTCATTTCGctaggtttttgttttttctttttgtttttttattgtcattaatatttattttacactgcCAAACATTACCAGTTGCAATGACTTTAATTGCTGCTTTACTCATCTCTGTCAAGTGTCTCACTGTGCAAACATACTCTTCGTTGTGTTACGTTAATGctagcattatttattaatgctctTTGATGTGCGTGTAGCATATTAAAGCGTTTTAATCAAACTGTAGCATCGGCAATGCAGGCTTATccttaatatattgttttgattATACATATGCAGTAAATATACCTaatcaaatgtacaaaattcTGTATAATATCGAAGCCTTTTGAAACAACCCCTTTCTCGTTGCTTTCTTTACTCTATTTAAAAACTCATTCTGTTGCcaagtttgctttttttgtcagtagtttatatattttttgaattgtCTCCAttctttacattgtttttcatttctctctgtttacatacatgtatttattgtgcTGTACAGTACATATTGTTGCTCTTATCATGTGGTTGTAAATGATTATATCATCCCTTTTGGTGATGGTGTTGTATTATGGAACTCTTACTGAGagaatgtttgttatttttagtatgtaATGATCCCATTGATATGTGTCTCTAGAGAGATTGCGTAGAGAAAGGGAAAGCCAAATTATAGtcattactgtgtttatttttcattctttctttctttttaaaagaaagtggTTCCGTGGCCTGAGGGTTGTGCCTTACAGATAGCTCTTTAGATTTTATCCTCTTGCTGCACTAAAGAAACTACTGGCTGGAAACTGACCTAGATGTGTTTGTCGTGTTCCTCCTGTTTATGTGGCATAAACGCTCccagcataaaacaaaaacaaaaaaaaaaatag

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13293 PDE4; cAMP-specific phosphodiesterase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91873 lncRNA upstream 31306 8449053 ~ 8479688 (+) True G62046
TU91869 lncRNA upstream 32663 8477226 ~ 8478331 (+) False smim15
TU91872 lncRNA upstream 40158 8469057 ~ 8470836 (+) True G62045
TU91897 lncRNA upstream 43898 8465249 ~ 8467096 (+) True G62064
TU91827 lncRNA upstream 116251 8392378 ~ 8394743 (+) True G62013
TU92132 lncRNA downstream 374259 8974097 ~ 8974345 (+) True G62215
TU92133 lncRNA downstream 374560 8974398 ~ 8974669 (+) True G62216
TU92160 lncRNA downstream 432681 9032519 ~ 9035747 (+) True G62231
TU92153 lncRNA downstream 434324 9034162 ~ 9037868 (+) False G62231
TU92296 lncRNA downstream 590217 9190055 ~ 9191320 (+) True G62314
XM_043247025.1 mRNA upstream 16540 8488924 ~ 8494454 (+) False elovl7a
XM_043247024.1 mRNA upstream 16540 8488927 ~ 8494454 (+) True elovl7a
XM_043247023.1 mRNA upstream 22464 8480297 ~ 8488530 (+) False ercc8
XM_043247022.1 mRNA upstream 22464 8480805 ~ 8488530 (+) True ercc8
XM_043247027.1 mRNA upstream 32668 8477171 ~ 8478326 (+) True smim15
XM_043247252.1 mRNA downstream 6957 8606795 ~ 8610700 (+) True si:dkey-190g11.3
XM_043247250.1 mRNA downstream 11659 8611497 ~ 8617069 (+) True plk2b
XM_043246673.1 mRNA downstream 40064 8639902 ~ 8644985 (+) True mier3b
XM_043246674.1 mRNA downstream 40064 8639902 ~ 8644985 (+) False mier3b
XM_043246676.1 mRNA downstream 50157 8649995 ~ 8652068 (+) True cenph
TU91548 other upstream 981926 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 987098 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1661283 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1661283 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1744451 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1104643 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 1749121 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 1831964 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 1869036 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2592886 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile