RNA id: XM_043246673.1


Basic Information

Item Value
RNA id XM_043246673.1
length 2285
RNA type mRNA
GC content 0.46
exon number 13
gene id mier3b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8639902 ~ 8644985 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAGTCTGTCATTGGCTCCCTGTGACCATCCGGGTACTGCAGCACAGCCAACCTATGAGGCCAAAGACACCAATATGGCGGAGGCTTCCTTTGGGAGTTCGAGCCCTGTTGGCTCATTGTCTTCAGAGGATCATGACTTTGATCCAACCGCTGAGATGTTAATTCACGAGTATGACGATGAGAGAACTTTGGAGGAGGAAGAGCTTTTGGAGGGAGAGAAGAATTTCAGTGCAGAATTGTCAGACCTGGAGAGGGAGGGGAACATGCCGATCGAGGAGTTGTTGGCTATGTATCGTTATGAAGCGTCAGTCAGTACGGGGGCGGGATCTAGCATGGACAGTTCCTCTGTTGAACTAGCTGATGATCTGCCTGACATGACCCTGGATAAGGAGGAGATAGCAAAAGATCTCTTGTCAGGAGATTATGAGGAGGAGACCCAGTCGTCTGCTGATGATCTGACCCCTTCTGTCACCTCCCACGAGGCCACAGACTTCTTCCCTAGAACACTCAGATCCAACGCAACATATGATGGTGACAAAGAATCTGAAGGGGAGGAGGACGGTGTAAGTAGTGAAGATTCTAGAAAGGAAATAATGGTCGGATCTCAGTATCAAGCAGAAGTTCCACTGGGGGTTAGCCActataatgatgatgaaaaagTGTACGAGGAGGAAGATCAGCTGCTGTGGTGTCCTGACATGCTGTCAGAGTGTAAAGTGAAAGACTACCTCAGAGAAGCGCTGTCACAGCCTACAGATGACAGTACAGAAAATTCCACACCTGAACACATACGAGATAACGAACAGGCCTTGTTTGagcttttgaaatgtaattacgACACCCGTGAGGCACTGACGCGATACCGCAGTAATGTGAAGACTTTGAAAGAAGAATCCCCACCGTGGTCGGAGGAAGAATGTAGAAACTTTGAACATGCGCTGCAGATTTATGAGAAAAACTTCCATCTCATTCAGAAACACAAGgtGCAGACCCGGACTGTGGCAGAATGTGTGGCTTTTTACTATATGTGGAAAAAGTCTGAACGTTTTGATTACTTTGCTCAGCAGAACCGATTTGGTAAAAAGAAGTACAGTTGTTACCCCGGTGTGACAGACCTGATGGACAGGCTGGTGGACGAGGCGGAGGGTCTGGCTGTGGACAGCTCGTCATCGGTGTGTTCAGCAGGAGCCGGGGGACGGATGGAGGCATCGGCGGAGCAACAGCTTGGCCTGCTGAACTCCATCACTGCCAGTGACCTCACAGCCATAAGCAACAGCGTAGCAACTGTGTGCAATGGTCCAGGAGACATAAGCTGTTTAGACTCCCCGTACTTCCCCCCTCTGGAGAGTTTACACCGAGGAGCCCTAAACCATGACGATCAACTCAGCTATGCCACAAACGGAGACGGCGGCTGCCTCAACATGCTGGATTCTGGCTTCTACCGCTCAGACCTGGGCCAGATCAGCGTGTGCAGCACCAAAGACTGCGAACGGCCCTCCAAGAGGCTCAAGATGGGCCTTTCGGAGTCCTTCATCAACGACGTGTCTGTTTCTAACCTGGACTTCGAGGGCAGACGTGCGCATCGCATTACTGGCGCCACGATGGCGGTGTCAGTCACAGACTTCAGCAGCATAGGGAGCAGCGAAACTAACGGTTTTCTCGGCTCTCATTCACGACACCACCAACACACTGCACTTCAGTCCGACTGACTGTCTTCTGACATCCAGACACTCGTTCATCTGCTCACTGACtattagttctttttttaaattaaaaaaatatctatatataaatatatgaatatacttTTCGGtcgtattttttttctttttgtttttgtaatatgaCATCAGTGATGTCTTTATTGTACAGAGCTAAGAAATCTTGATTTCTCAAGAGTTAAAATAGCCATTTATTTTTCTGGTCCTTCAGATAtttaatatccttttttttgtcttcggTGATACACAGTTAAACCTAAATGCTGGAGCAGAGAGCCGTGATCTCTTACTGTACTCATCTCGACACCTGCATCGTTAAGTTTCACTGTCTCACAAAGTCGTTGCTGCCACCGAAACTGCATTTTTCGTTGTCGATGTTTTAAGATTTTTCATGTATACGTGTTTGTTTCAAAACTTGGtacttttttcagtgtttacaCCACCCAAGATAGACTAAGCCTTGGGAAATGTAGCATTTTGTATATCAGGAAACCGgcttttgtaattaaaaatactgatttctttgaagcaaaagacaaaaaaaaaaaaacagagcactTCTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91873 lncRNA upstream 160214 8449053 ~ 8479688 (+) True G62046
TU91869 lncRNA upstream 161571 8477226 ~ 8478331 (+) False smim15
TU91872 lncRNA upstream 169066 8469057 ~ 8470836 (+) True G62045
TU91897 lncRNA upstream 172806 8465249 ~ 8467096 (+) True G62064
TU91827 lncRNA upstream 245159 8392378 ~ 8394743 (+) True G62013
TU92132 lncRNA downstream 329112 8974097 ~ 8974345 (+) True G62215
TU92133 lncRNA downstream 329413 8974398 ~ 8974669 (+) True G62216
TU92160 lncRNA downstream 387534 9032519 ~ 9035747 (+) True G62231
TU92153 lncRNA downstream 389177 9034162 ~ 9037868 (+) False G62231
TU92296 lncRNA downstream 545070 9190055 ~ 9191320 (+) True G62314
XM_043247250.1 mRNA upstream 22833 8611497 ~ 8617069 (+) True plk2b
XM_043247252.1 mRNA upstream 29202 8606795 ~ 8610700 (+) True si:dkey-190g11.3
XM_043247308.1 mRNA upstream 40064 8531462 ~ 8599838 (+) False pde4d
XM_043246676.1 mRNA downstream 5010 8649995 ~ 8652068 (+) True cenph
XM_043246675.1 mRNA downstream 12303 8657288 ~ 8661484 (+) True dimt1l
XM_043246738.1 mRNA downstream 169088 8814073 ~ 8820262 (+) True si:ch73-70k4.1
XM_043246896.1 mRNA downstream 268477 8913462 ~ 8918706 (+) True si:ch211-150o23.3
XM_043246897.1 mRNA downstream 268477 8913462 ~ 8918706 (+) False si:ch211-150o23.3
TU91548 other upstream 1110834 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 1116006 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1790191 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1790191 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1873359 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1059496 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 1703974 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 1786817 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 1823889 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2547739 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile