gclm (gclm,LOC107599012,LOC107657862,LOC107757997,LOC107699464,LOC107603255)


Basic Information

Item Value
gene id gclm
gene name gclm,LOC107599012,LOC107657862,LOC107757997,LOC107699464,LOC107603255
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7667093 ~ 7671807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247647.1
ACTGTTTAGTGTACTCGAGAGAGAGGGAAACATTGTACCCGAGGGCATTCTACTGTTAATACTTACATAGCACTTGTTTCCAGTCACCGGTTTTTACGGAGCAATGGAGCCTCATGTAAACGCGAAGCGGCTTTTTAATCACGCGACAACCCTGAAGCTTCACACGGGGAATTTAGTGAACCGCAGTCGACTTAAGAAGAAATGTCCGTCTTCACCTAGTGAGGAGCTTCAAGACTGCATCCAAGGCACACTGAGCGAGTGGTTTGCCGCAATGCCGTCATCTCTTGACTCTCTTCCCAGCATTCTGGACTGTGCTATTCCAGAAAACACAGAGGCCATCACcccagaggagagagaggagctgAAAGTGTCTGtcaagctttttctcactgagtcAGACACTTCATCCATCAGAAGTGCAGTGGACATGGCTTGTCTTTCGTTAGGAGTATCTCAGTTGGACTCTGTGATCATTGCTCCACCTCCTCTCCCCGAGGGTGAGGCACAGACACTGACCCACCTGCAGCCGCTGTGGGAGGAGTTGGAAAGTCTTGTGCGAAGCCAGAAGATCGCTGCCATCGGCACGTCTGACTTGGACAAAACTCTTCTAGAGCAGCTGTATAACTGGGCTCAGATAAAGCCAAGTAGTAATCAGGTGAATCTGGCCTCGTGCTGTGTGATGCCTCCAGACCTCACTGCATTTGCTAAAGAGTTCGACATACAACTGCTTACGCACAATGACCCCAAAGAGCTAATCAGTGCAGCGGGCTTCCAGGAAGCAGTGCAGGGAAGCAGTAAGGACCTGCAGGTGGTTGATTGGAGGCTGGAGTGGGTCTTACGGTACTCCATCATCGTCAAGAGCAGAGGCATCATAAAAGCAAAAGGATATATTGTTCATGCTAAAAAGGGCAACACCCTTTAACATGTCTAGATTGAATAGGGTTTCTTGAAATCTTGGGAGCAACTACGTCATTGGAtgcatattttacagtttttgtcaACACACTAAACTGGATGTGatttttcaaaagaacaaaaattcaCTCGACCCACTTGACTCATTTTTCTTTATGATTTAGAATATTTAGACAGCAATCTGTTCTTGTAGATAAATTCAAAGTGCCTCTTTTTTTCCAACCTGGCCTGATTTAATTctctttattattcaaaatggtaaaaattaaacataatacaATGGTTGATAGGACAACAGATTAAGATGCTTCGaatatcacaatattattttgttaatcatTGCACCctttttttctggtttatttaaaaatgttaaccgCTTTTTTAAAGAGGGCCACAtagttgtatttttactttaaattttaatgtcaaATTTTAAGTCCTGCTGGCATTTTAcgtttgtataatttattttaattgatgcTTTGCTTGGAATGttcagtaaatgttttcttaCATGTTGTCGACAGATGATTCTATGTTTTGCATCCCTTTGTAAACAAAATGCCTTGCCTATctgataaaaagaaatattcaaatatctAACTGTTTGGGAGGCTGTTAACATGCATGGCATGAACAGCATTAACCCGTTGTATATAAGAACACTGGAAAATTCCACACTTGAAGGAAAATAATGATTATAGTTCCAGTATCCATCAAATAgtcagaatatatatttttacctgtgttatttattcattgcaaTGACGATTCCTGTTGGAGCCAATCTTATAATACAGTTCTTGTTtcatgtactgtactgtactgtactgtaattACTATTTTCCCATATTGTGTTAAACATTTCTAATGCGGTTTATAAACTTAGgaattgaaaacaaaacaa

Function

symbol description
gclm Predicted to enable enzyme regulator activity. Predicted to be involved in glutathione biosynthetic process and positive regulation of glutamate-cysteine ligase activity. Predicted to be part of glutamate-cysteine ligase complex. Is expressed in several structures, including brain; germ ring; immature eye; liver; and pronephric duct. Human ortholog(s) of this gene implicated in myocardial infarction and vascular dementia. Orthologous to human GCLM (glutamate-cysteine ligase modifier subunit).

NR:

description
PREDICTED: glutamate--cysteine ligase regulatory subunit

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11205 GCLM; glutamate--cysteine ligase regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247647.1 True 1825 mRNA 0.40 7 7667093 7671807

Neighbor

gene id symbol gene type direction distance location
slc5a9 slc5a9,LOC107757988,LOC107707571 coding upstream 304 7660547 ~ 7666789 (+)
mrpl55 LOC107657860,LOC107707588,LOC107757989,LOC107699412,LOC107580195,LOC107549705 coding upstream 6894 7659030 ~ 7660199 (+)
paox1 LOC107707587,LOC107758000,LOC107699439,LOC107603235 coding upstream 8437 7655680 ~ 7658656 (+)
fnbp1l fnbp1l,LOC107707572,LOC107599010,LOC107757999 coding upstream 72742 7554832 ~ 7594351 (+)
abl2 abl2,LOC107758002,LOC107699422,LOC107657876,LOC107599009,LOC107707589,LOC107603207 coding upstream 113168 7529706 ~ 7553925 (+)
dnttip2 LOC107707582,LOC107599013,LOC107657880,LOC107700367,LOC107603264 coding downstream 231 7672038 ~ 7677356 (+)
LOC122350682 col4a1,LOC107688716,LOC107557928,LOC107715912,LOC107721605 coding downstream 348417 8020224 ~ 8028389 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC107657884,LOC103028496 coding downstream 471067 8142874 ~ 8216882 (+)
cdkn2c cdkn2c,LOC107699560,LOC107743873,LOC107707576,LOC107548184,LOC107599829,LOC107657864,LOC107550257 coding downstream 675476 8347283 ~ 8351468 (+)
si:ch211-198n5.11 si:ch211-198n5.11,LOC107657892,LOC107752441,LOC107599801,LOC108265604,LOC107700393 coding downstream 785427 8457234 ~ 8463215 (+)
G61902 LOC107707585,LOC107757998,LOC107599011 non-coding upstream 63071 7600743 ~ 7604022 (+)
LOC122350889 NA non-coding upstream 154657 7511553 ~ 7512436 (+)
G61841 LOC107700326 non-coding upstream 154665 7511083 ~ 7512428 (+)
LOC122350892 NA non-coding upstream 155559 7511034 ~ 7511534 (+)
LOC122350887 NA non-coding upstream 165606 7497374 ~ 7501487 (+)
G61916 NA non-coding downstream 77901 7749708 ~ 7756124 (+)
LOC122350903 NA non-coding downstream 603768 8275575 ~ 8280335 (+)
G62002 NA non-coding downstream 611953 8283760 ~ 8283984 (+)
LOC122350828 NA non-coding downstream 680224 8352031 ~ 8354451 (+)
G62021 NA non-coding downstream 690270 8362077 ~ 8371721 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 138007 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 817382 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 900550 6756105 ~ 6766543 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other upstream 2402727 5104570 ~ 5264366 (+)
smim15 smim15,LOC107700545 other downstream 805364 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 2032674 9704481 ~ 9705639 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 2677107 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 2759995 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 2864336 10536143 ~ 10551791 (+)

Expression


Co-expression Network