zgc:101100 (zgc:101100,LOC107677009,LOC107731167,LOC107745807,LOC107585932,LOC107695257,LOC107549997)


Basic Information

Item Value
gene id zgc:101100
gene name zgc:101100,LOC107677009,LOC107731167,LOC107745807,LOC107585932,LOC107695257,LOC107549997
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10096006 ~ 10098635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247711.1
TGGAAACTGAGCTGGAGAGGACCTAAACCACAGTCAACGCGGAGCATTAACGGTCCGCTTTACCTAGAAAGTGTCTCGTGATATTTTCGGGAATTTTCGCAGCCGTTTCCTTTGGGATTTTAGCATCGCACGAGtgttgaaaaaaattatgcacaCTTTACCTCATTTTTATGGGCAGCAAAATGAATTCCGTTTATTTCTGCGGACCAAGAAGCGGCCAGGGGCCTTTTCCATTGCAACGCGTCAACTCGTTGTTTCACGAGGCTCACCAGCAGATGGCGCAGCAGTACCAGCTTCATTCAGCGGCCAGTACCTCGTCCGTGCAGACTCTCACTGTGGCGGAGCGCCTGGCAGAACTCATTCTTGAGGCACGCTACGGAAACCAGCAAAAGCAGCGTCGCAGTCGCACCGCCTTCAGCGTGTCCCAGTTACAAGCCCTCGAAAAGGCTTTTCAGCAAACCCAGTATCCAGATGTGGGCATGAGAGAGCGATTAGCAGTCTGCATCAACCTCCCAGAAGCCCGTATCCAGGTGTGGTTCAAAAACAGACGTGCCAAATTTAGAAAAGGCCAACGCTTCGCACCCCTTTCCAAAGAAGAAAGCCAAGTGCATCGCCCTGCTACTAAACAACGGAAAGAATTAGTGATGGACCAGGAAAAAGGCTCTCATTCAAAATCTCAATCCCCTTTTAGGGAAAACAGCACTGTTCCTTCTTCGTCGGACTCTGTTCACCTTCATTCCCACCCCAGACTGCACTCCTCTGCTGTTCTTTCATTCGTTACCGGAGAACACTACCAGCAACCGATGCCTCACGCGCTCGGGCTGCTGTCTGCGGGTCTACCTTTTTCTCCCACGTATTTGCCTGTAATGCAACAGCAGCACAGCACAGCCGTCAATCTTGTGCCATTGGGGAAATGCAACAATCTCATGCTTCAGTCTGCCTGTCAATCTAAATCTATGGTTCACCACCACTTGGACATGTAGCCACCAACCAACAAAGCCCACTGAGCCAGTTGTCCTCATTAGGACGTGAAGAGGGAACAGGTGTTCACAAGTCCCTCCCCCCCCACCACAGCATCGTAACTTTTACCCCTTAAAATAGCATAAGGGTTTGGATTTCGATCTTTTTCTGTAACTTTCATTAATTGGTTTCGACCCTGTTTGTACAAACTGGCTTTCTTTGTGAACTTCCATGCATAGCTTAGAGCATTGttgagaaaaatgttatgttgcaCATACATATTTGAGCACTTTGTAGATTTTGATGAACATGCAGTGATTTTGTATACAAATAAACACGGA
>XM_043247712.1
GGAAACTGAGCTGGAGAGGACCTAAACCACAGTCAACGCGGAGCATTAACGGTCCGCTTTACCTAGAAAGTGTCTCGTGATATTTTCGGGAATTTTCGCAGCCGTTTCCTTTGGGATTTTAGCATCGCACGAGtgttgaaaaaaattatgcacaCTTTACCTCATTTTTATGGGtaaatatcagttttttttgcaactgATCATTATCATTCCACAGGTCATTGGAGGTCGTAAGCAGCAAAATGAATTCCGTTTATTTCTGCGGACCAAGAAGCGGCCAGGGGCCTTTTCCATTGCAACGCGTCAACTCGTTGTTTCACGAGGCTCACCAGCAGATGGCGCAGCAGTACCAGCTTCATTCAGCGGCCAGTACCTCGTCCGTGCAGACTCTCACTGTGGCGGAGCGCCTGGCAGAACTCATTCTTGAGGCACGCTACGGAAACCAGCAAAAGCAGCGTCGCAGTCGCACCGCCTTCAGCGTGTCCCAGTTACAAGCCCTCGAAAAGGCTTTTCAGCAAACCCAGTATCCAGATGTGGGCATGAGAGAGCGATTAGCAGTCTGCATCAACCTCCCAGAAGCCCGTATCCAGGTGTGGTTCAAAAACAGACGTGCCAAATTTAGAAAAGGCCAACGCTTCGCACCCCTTTCCAAAGAAGAAAGCCAAGTGCATCGCCCTGCTACTAAACAACGGAAAGAATTAGTGATGGACCAGGAAAAAGGCTCTCATTCAAAATCTCAATCCCCTTTTAGGGAAAACAGCACTGTTCCTTCTTCGTCGGACTCTGTTCACCTTCATTCCCACCCCAGACTGCACTCCTCTGCTGTTCTTTCATTCGTTACCGGAGAACACTACCAGCAACCGATGCCTCACGCGCTCGGGCTGCTGTCTGCGGGTCTACCTTTTTCTCCCACGTATTTGCCTGTAATGCAACAGCAGCACAGCACAGCCGTCAATCTTGTGCCATTGGGGAAATGCAACAATCTCATGCTTCAGTCTGCCTGTCAATCTAAATCTATGGTTCACCACCACTTGGACATGTAGCCACCAACCAACAAAGCCCACTGAGCCAGTTGTCCTCATTAGGACGTGAAGAGGGAACAGGTGTTCACAAGTCCCTCCCCCCCCACCACAGCATCGTAACTTTTACCCCTTAAAATAGCATAAGGGTTTGGATTTCGATCTTTTTCTGTAACTTTCATTAATTGGTTTCGACCCTGTTTGTACAAACTGGCTTTCTTTGTGAACTTCCATGCATAGCTTAGAGCATTGttgagaaaaatgttatgttgcaCATACATATTTGAGCACTTTGTAGATTTTGATGAACATGCAGTGATTTTGTATACAAATAAACACGGA

Function

symbol description
zgc:101100 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

NR:

description
PREDICTED: diencephalon/mesencephalon homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247711.1 False 1301 mRNA 0.48 4 10096006 10098635
XM_043247712.1 True 1361 mRNA 0.47 4 10096007 10098635

Neighbor

gene id symbol gene type direction distance location
rexo1 rexo1,LOC107585876,LOC107731267,LOC107745805,LOC107548912,LOC107695255 coding upstream 6695 10079286 ~ 10089311 (+)
mknk2b mknk2b,mknk2,LOC107585877,LOC107731184,LOC107695256 coding upstream 19023 10063745 ~ 10076983 (+)
mob3a LOC107585875,LOC103368804,LOC107695254,LOC104921817,LOC107731185,LOC103137270,LOC101067073,LOC100699828 coding upstream 37063 10054080 ~ 10058943 (+)
LOC122351119 zap70,LOC107585931,LOC107695253,LOC107676994,LOC107745809,LOC107731183,LOC107548917 coding upstream 42619 10044076 ~ 10053387 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107695249,LOC107750933 coding upstream 142862 9934120 ~ 9953144 (+)
csnk1g2b LOC107745806,LOC107695259,LOC106925954,LOC106953035,LOC103468226,LOC107676849,LOC107585879 coding downstream 1210 10099845 ~ 10124600 (+)
mfsd12b mfsd12,mfsd12b,LOC107585878,LOC107695260,LOC107745804 coding downstream 27641 10126276 ~ 10132245 (+)
nfic nfic,LOC107585880,LOC107745803,LOC107548967,LOC107695213 coding downstream 53633 10152268 ~ 10231799 (+)
fzr1a fzr1,fzr1a,LOC105904033,LOC105895242 coding downstream 161113 10259748 ~ 10264771 (+)
LOC122350469 NA coding downstream 174197 10272832 ~ 10279601 (+)
G62631 NA non-coding upstream 98522 9995571 ~ 9997484 (+)
G62613 NA non-coding upstream 114532 9980621 ~ 9981474 (+)
G62574 NA non-coding upstream 364995 9730777 ~ 9731011 (+)
G62573 NA non-coding upstream 367232 9728065 ~ 9728774 (+)
G62490 NA non-coding upstream 383493 9712203 ~ 9712513 (+)
G62685 NA non-coding downstream 38020 10136655 ~ 10137222 (+)
G62684 NA non-coding downstream 38688 10137323 ~ 10139265 (+)
G62686 NA non-coding downstream 42887 10141522 ~ 10141884 (+)
G62688 NA non-coding downstream 48232 10146867 ~ 10147082 (+)
G62690 NA non-coding downstream 50281 10148916 ~ 10149180 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other upstream 390367 9704481 ~ 9705639 (+)
smim15 smim15,LOC107700545 other upstream 1617675 8477171 ~ 8478331 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other upstream 2566920 7306119 ~ 7529086 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other upstream 3246295 6848481 ~ 6849711 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other upstream 3329463 6756105 ~ 6766543 (+)
col2a1a col2a1a,LOC107585898,LOC107668081,LOC107695274,LOC107549173,LOC107731244 other downstream 250279 10348914 ~ 10367863 (+)
G62692 cry1ba,LOC107578471,LOC108441644,LOC107668038,LOC101164536,LOC108265656,LOC103358259 other downstream 333167 10431802 ~ 10478799 (+)
fhad1 LOC107731229,LOC107695278,LOC107550056,LOC107667985,LOC107555592,LOC107745840,LOC107745827 other downstream 437508 10536143 ~ 10551791 (+)
LOC122350428 LOC107668044,LOC107731208,LOC107555595 other downstream 1094089 11192724 ~ 11197803 (+)
G62940 LOC107668028,LOC107745767,LOC107695299,LOC107549994 other downstream 1196170 11294805 ~ 11311433 (+)

Expression


Co-expression Network