RNA id: XM_043247712.1


Basic Information

Item Value
RNA id XM_043247712.1
length 1361
RNA type mRNA
GC content 0.47
exon number 4
gene id zgc:101100
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10096006 ~ 10098635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAACTGAGCTGGAGAGGACCTAAACCACAGTCAACGCGGAGCATTAACGGTCCGCTTTACCTAGAAAGTGTCTCGTGATATTTTCGGGAATTTTCGCAGCCGTTTCCTTTGGGATTTTAGCATCGCACGAGtgttgaaaaaaattatgcacaCTTTACCTCATTTTTATGGGtaaatatcagttttttttgcaactgATCATTATCATTCCACAGGTCATTGGAGGTCGTAAGCAGCAAAATGAATTCCGTTTATTTCTGCGGACCAAGAAGCGGCCAGGGGCCTTTTCCATTGCAACGCGTCAACTCGTTGTTTCACGAGGCTCACCAGCAGATGGCGCAGCAGTACCAGCTTCATTCAGCGGCCAGTACCTCGTCCGTGCAGACTCTCACTGTGGCGGAGCGCCTGGCAGAACTCATTCTTGAGGCACGCTACGGAAACCAGCAAAAGCAGCGTCGCAGTCGCACCGCCTTCAGCGTGTCCCAGTTACAAGCCCTCGAAAAGGCTTTTCAGCAAACCCAGTATCCAGATGTGGGCATGAGAGAGCGATTAGCAGTCTGCATCAACCTCCCAGAAGCCCGTATCCAGGTGTGGTTCAAAAACAGACGTGCCAAATTTAGAAAAGGCCAACGCTTCGCACCCCTTTCCAAAGAAGAAAGCCAAGTGCATCGCCCTGCTACTAAACAACGGAAAGAATTAGTGATGGACCAGGAAAAAGGCTCTCATTCAAAATCTCAATCCCCTTTTAGGGAAAACAGCACTGTTCCTTCTTCGTCGGACTCTGTTCACCTTCATTCCCACCCCAGACTGCACTCCTCTGCTGTTCTTTCATTCGTTACCGGAGAACACTACCAGCAACCGATGCCTCACGCGCTCGGGCTGCTGTCTGCGGGTCTACCTTTTTCTCCCACGTATTTGCCTGTAATGCAACAGCAGCACAGCACAGCCGTCAATCTTGTGCCATTGGGGAAATGCAACAATCTCATGCTTCAGTCTGCCTGTCAATCTAAATCTATGGTTCACCACCACTTGGACATGTAGCCACCAACCAACAAAGCCCACTGAGCCAGTTGTCCTCATTAGGACGTGAAGAGGGAACAGGTGTTCACAAGTCCCTCCCCCCCCACCACAGCATCGTAACTTTTACCCCTTAAAATAGCATAAGGGTTTGGATTTCGATCTTTTTCTGTAACTTTCATTAATTGGTTTCGACCCTGTTTGTACAAACTGGCTTTCTTTGTGAACTTCCATGCATAGCTTAGAGCATTGttgagaaaaatgttatgttgcaCATACATATTTGAGCACTTTGTAGATTTTGATGAACATGCAGTGATTTTGTATACAAATAAACACGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92716 lncRNA upstream 98523 9995571 ~ 9997484 (+) True G62631
TU92683 lncRNA upstream 114533 9980621 ~ 9981474 (+) True G62613
TU92630 lncRNA upstream 364996 9730777 ~ 9731011 (+) True G62574
TU92629 lncRNA upstream 367233 9728065 ~ 9728774 (+) True G62573
TU92508 lncRNA upstream 383494 9712203 ~ 9712513 (+) True G62490
TU92786 lncRNA downstream 38020 10136655 ~ 10137222 (+) True G62685
TU92785 lncRNA downstream 38688 10137323 ~ 10139265 (+) True G62684
TU92787 lncRNA downstream 42887 10141522 ~ 10141884 (+) True G62686
TU92789 lncRNA downstream 48232 10146867 ~ 10147082 (+) True G62688
TU92791 lncRNA downstream 50281 10148916 ~ 10149180 (+) True G62690
XM_043247805.1 mRNA upstream 6696 10079286 ~ 10089311 (+) True rexo1
XM_043246139.1 mRNA upstream 19024 10063745 ~ 10076983 (+) True mknk2b
XM_043247829.1 mRNA upstream 37064 10054082 ~ 10058943 (+) False mob3a
XM_043247828.1 mRNA upstream 37497 10054080 ~ 10058510 (+) True mob3a
XM_043248004.1 mRNA upstream 42620 10047207 ~ 10053387 (+) True LOC122351119
XM_043247418.1 mRNA downstream 1210 10099845 ~ 10124600 (+) False csnk1g2b
XM_043247417.1 mRNA downstream 1210 10099845 ~ 10124600 (+) True csnk1g2b
XM_043247465.1 mRNA downstream 27641 10126276 ~ 10132245 (+) True mfsd12b
XM_043247464.1 mRNA downstream 53633 10152268 ~ 10231799 (+) True nfic
XM_043247661.1 mRNA downstream 161113 10259748 ~ 10264771 (+) True fzr1a
TU92500 other upstream 390368 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2566939 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 2572111 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 3246296 6848481 ~ 6849711 (+) True G61713
TU92869 other downstream 250324 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 333167 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 370239 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 1094089 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 1196170 11294805 ~ 11311433 (+) True G62940

Expression Profile